|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043307 ID=TCONS_00043307|Name=TCONS_00043307|organism=Clytia hemisphaerica|type=transcript|length=991bp
CCTGCCAGTACGATATGGGGGTCTGGGTATACCAATCCTTTCCGAAATTG
CTgattatgaatttgaaaattcaaagaaagTATCCAAGGAACTGACTGAG
AACATAATAACCCAACGAAAAGAGTTTAGAGGAAATGACAACAAAGGAAA
GTATACCATCTTGAAAGAAAAGGAGGAGAGACACAAGAATTCCCTGGTTG
AGATCCGGAATGACCTAACGATCGACGAGAGAAAAGCCAATGATTTAGCA
CAACTCAAAGGGGCATCTAACTGGCTTACAGCCAAACCTCTTAAAAGTGA
ACATTTTGACCTCACAAAAAGGGAATTTTTCGATTCAATTGCTATCAGAT
ATCGCTGGCAGCTCAAGCACCTACCAAGCATTTGCGCATGTGGTACAAAG
TTTTCTGTTGAACATGCTTTGTCTTGCCCCAAAGGTGGCTTCATATACCA
GCGCCATAATGAGATCAGAGACACTTTGGCCATGACACTAAATGAAGTCA
CCAAGGATGTCACCATTGAACCGCAACTGGAACCCATCACCGGAGAATGT
CTTGGTCAAGGTGTAATCAAGGAGGATGGTGCTAGAGCTGACATAAGCGC
AAGGGGATTCTGGACTAGAGGCCAGCGGGCATTTTTTGATGTTAGGGTAT
TCAATGCCTACGCCCAACGGTACTCTAGGGTGAGTCCTACTTGTGCTttt
gaaatgaatgaaaaggagaaaaagagaCAATACAACCAGAGGATAATCCA
AGTAGATGGAGGCTCCTTCACACCACTCATTTTCTCGACAAATGGAGGTG
CAGGCAGAGAGGCccaaattttcattaaagccCTAGCTGCTCTCTTATCA
GAAAAAAGGGATGAACTCATGTCAATGACTTTAAATTTTCTGAGAACAAA
GATTTCTTTTGCATTGGCAAGGTCAACTGTCCTATGCATTCGTGGCAGCA
GAATTCCAAAGAACAGCGTCACAATGGTTGAAAATCAGGAC Run BLAST on NCBI protein sequence of TCONS_00043307-protein >TCONS_00043307-protein ID=TCONS_00043307-protein|Name=TCONS_00043307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
LPVRYGGLGIPILSEIADYEFENSKKVSKELTENIITQRKEFRGNDNKGK
YTILKEKEERHKNSLVEIRNDLTIDERKANDLAQLKGASNWLTAKPLKSE
HFDLTKREFFDSIAIRYRWQLKHLPSICACGTKFSVEHALSCPKGGFIYQ
RHNEIRDTLAMTLNEVTKDVTIEPQLEPITGECLGQGVIKEDGARADISA
RGFWTRGQRAFFDVRVFNAYAQRYSRVSPTCAFEMNEKEKKRQYNQRIIQ
VDGGSFTPLIFSTNGGAGREAQIFIKALAALLSEKRDELMSMTLNFLRTK
ISFALARSTVLCIRGSRIPKNSVTMVENQD Run BLAST on NCBI transcript from alignment at sc0004114:875..1865 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043307 ID=TCONS_00043307|Name=TCONS_00043307|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at sc0004114:875..1865 (Clytia hemisphaerica)
GTCCTGATTTTCAACCATTGTGACGCTGTTCTTTGGAATTCTGCTGCCAC
GAATGCATAGGACAGTTGACCTTGCCAATGCAAAAGAAATCTTTGTTCTC
AGAAAATTTAAAGTCATTGACATGAGTTCATCCCTTTTTTCTGATAAGAG
AGCAGCTAGggctttaatgaaaatttggGCCTCTCTGCCTGCACCTCCAT
TTGTCGAGAAAATGAGTGGTGTGAAGGAGCCTCCATCTACTTGGATTATC
CTCTGGTTGTATTGtctctttttctccttttcattcatttcaaaAGCACA
AGTAGGACTCACCCTAGAGTACCGTTGGGCGTAGGCATTGAATACCCTAA
CATCAAAAAATGCCCGCTGGCCTCTAGTCCAGAATCCCCTTGCGCTTATG
TCAGCTCTAGCACCATCCTCCTTGATTACACCTTGACCAAGACATTCTCC
GGTGATGGGTTCCAGTTGCGGTTCAATGGTGACATCCTTGGTGACTTCAT
TTAGTGTCATGGCCAAAGTGTCTCTGATCTCATTATGGCGCTGGTATATG
AAGCCACCTTTGGGGCAAGACAAAGCATGTTCAACAGAAAACTTTGTACC
ACATGCGCAAATGCTTGGTAGGTGCTTGAGCTGCCAGCGATATCTGATAG
CAATTGAATCGAAAAATTCCCTTTTTGTGAGGTCAAAATGTTCACTTTTA
AGAGGTTTGGCTGTAAGCCAGTTAGATGCCCCTTTGAGTTGTGCTAAATC
ATTGGCTTTTCTCTCGTCGATCGTTAGGTCATTCCGGATCTCAACCAGGG
AATTCTTGTGTCTCTCCTCCTTTTCTTTCAAGATGGTATACTTTCCTTTG
TTGTCATTTCCTCTAAACTCTTTTCGTTGGGTTATTATGTTCTCAGTCAG
TTCCTTGGATActttctttgaattttcaaattcataatcAGCAATTTCGG
AAAGGATTGGTATACCCAGACCCCCATATCGTACTGGCAGG Coding sequence (CDS) from alignment at sc0004114:875..1865 >TCONS_00043307 ID=TCONS_00043307|Name=TCONS_00043307|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0004114:875..1865 (Clytia hemisphaerica)
GTCCTGATTTTCAACCATTGTGACGCTGTTCTTTGGAATTCTGCTGCCAC
GAATGCATAGGACAGTTGACCTTGCCAATGCAAAAGAAATCTTTGTTCTC
AGAAAATTTAAAGTCATTGACATGAGTTCATCCCTTTTTTCTGATAAGAG
AGCAGCTAGggctttaatgaaaatttggGCCTCTCTGCCTGCACCTCCAT
TTGTCGAGAAAATGAGTGGTGTGAAGGAGCCTCCATCTACTTGGATTATC
CTCTGGTTGTATTGtctctttttctccttttcattcatttcaaaAGCACA
AGTAGGACTCACCCTAGAGTACCGTTGGGCGTAGGCATTGAATACCCTAA
CATCAAAAAATGCCCGCTGGCCTCTAGTCCAGAATCCCCTTGCGCTTATG
TCAGCTCTAGCACCATCCTCCTTGATTACACCTTGACCAAGACATTCTCC
GGTGATGGGTTCCAGTTGCGGTTCAATGGTGACATCCTTGGTGACTTCAT
TTAGTGTCATGGCCAAAGTGTCTCTGATCTCATTATGGCGCTGGTATATG
AAGCCACCTTTGGGGCAAGACAAAGCATGTTCAACAGAAAACTTTGTACC
ACATGCGCAAATGCTTGGTAGGTGCTTGAGCTGCCAGCGATATCTGATAG
CAATTGAATCGAAAAATTCCCTTTTTGTGAGGTCAAAATGTTCACTTTTA
AGAGGTTTGGCTGTAAGCCAGTTAGATGCCCCTTTGAGTTGTGCTAAATC
ATTGGCTTTTCTCTCGTCGATCGTTAGGTCATTCCGGATCTCAACCAGGG
AATTCTTGTGTCTCTCCTCCTTTTCTTTCAAGATGGTATACTTTCCTTTG
TTGTCATTTCCTCTAAACTCTTTTCGTTGGGTTATTATGTTCTCAGTCAG
TTCCTTGGATActttctttgaattttcaaattcataatcAGCAATTTCGG
AAAGGATTGGTATACCCAGACCCCCATATCGTACTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043307-exon-sc0004114-1491911889:875..1865 | TCONS_00043307-exon-sc0004114-1491911889:875..1865 | Clytia hemisphaerica | exon |
| TCONS_00043307-exon-sc0004114-1510915933:875..1865 | TCONS_00043307-exon-sc0004114-1510915933:875..1865 | Clytia hemisphaerica | exon |
| TCONS_00043307-exon-sc0004114-1575043694:875..1865 | TCONS_00043307-exon-sc0004114-1575043694:875..1865 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004114 | supercontig | sc0004114:875..1865 . |
Blast
The following BLAST results are available for this feature:
|
