TCONS_00043314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043314
Unique NameTCONS_00043314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043314 ID=TCONS_00043314|Name=TCONS_00043314|organism=Clytia hemisphaerica|type=transcript|length=576bp
AAAACATGAGATCAATTTTCCTCACGAGCAGCACCGGTTCTTATTTCTGA
GTgatctaactttttttcatcTCTGTATTTAGACTTTCACAGTCACGGGA
TACGAGAATAAAGATCGTAACTTGGTGAAACATATGATCAACTTCCTTGG
TGCTCAATACACTGGCTATCTCTCCAAGAATCATTCCTATCTTGTTTGTA
AAAAACGGGAAGGTGCCAAGTACAAAACAGCACTTGAATGGGGTATTCCT
GTCGTCAACGCTAAATGGCTTGGTGATATGATACAGACTGGCCAATCATT
TCCTTGCAAACTGAAATCTAAATACGCAAAAGTCGGCATTGCAGACGAAC
TCTTAATCAATCGGACATTTTCAAAGTACATAACAGAGCTTTGGGATAGC
AACACGAGCGAACAATCAGAAAGTGCGAACGGAACCATTGACGCTacatc
tggtgaaaaaaggaaactCCCCGAGGTAAAATAAAGTCGATTTTACCTCT
GTTTTACGGACTACATACATTACCAGTAATATATTAAAAAGGTGTCTTta
tgtcagctcgatttgctaTATTGGGC
Run BLAST on NCBI

protein sequence of TCONS_00043314-protein

>TCONS_00043314-protein ID=TCONS_00043314-protein|Name=TCONS_00043314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MINFLGAQYTGYLSKNHSYLVCKKREGAKYKTALEWGIPVVNAKWLGDMI
QTGQSFPCKLKSKYAKVGIADELLINRTFSKYITELWDSNTSEQSESANG
TIDATSGEKRKLPEVK
Run BLAST on NCBI

transcript from alignment at sc0004117:5136..8262+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043314 ID=TCONS_00043314|Name=TCONS_00043314|organism=Clytia hemisphaerica|type=transcript|length=3127bp|location=Sequence derived from alignment at sc0004117:5136..8262+ (Clytia hemisphaerica)
AAAACATGAGATCAATTTTCCTCACGAGCAGCACCGGTTCTTATTTCTGA
GTgatctaactttttttcatcTCTGTATTTAGACTTTCACAGTCACGGGA
TACGAGAATAAAGATCGTAACTTGGTGAAACATATGATCAACTTCCTTGG
TGCTCAATACACTGGCTATCTCTCCAAGAATCATTCCTATCTTGTTTGTA
AAAAGTAAGTGTAACTCAAACTCATGTGTCATcacaagcgatttgaagta
taCAAATGAAATGGAGCGTTCTTCAGACGTTCCTGAACATTCACGAACGT
TCCATAGCGTTCCTAGTACGTTCCAGAACGTTCTCGAACGTTTAGGAATG
TTCCGGAACGTCAACTAACGTTTGTGAATGATCCTTTGCGTCCAAAGGTT
AATATTTAACTCAATAAGAACGTTCGTGAACGTTTTAGGGTTTCTAGGGG
ATGAAACCACTGAGGACACAATGACCTAGCCATTCAAAACTAAGATTTTT
CGAACTATCTTCCCtgttattttcttcattttaatcTTCATATCTTTATT
CCTTAGACGGGAAGGTGCCAAGTACAAAACAGCACTTGAATGGGGTATTC
CTGTCGTCAACGCTAAATGGCTTGGTGATATGATACAGAGTGAGTAATCG
TTTTAAGTTTCATAAGAATACATCCAAGATTTTTGTAGCCTGTGGATGTc
cttagggatcttctcaaaaataaatttgcttaaataatcgaatataagcg
aaaaattcgcttaaataatcgaagtaCTTCAATTATATGGGGCCATAGCC
ATTAATCGACCACGCGGNttctcaaaaataaatttgcttaaataatcgaa
tataagcgaaaaattcgcttaaataatcgaagtaCTTCAATTATATGGGG
TCATAGCCATTAATCGACCACGCGAACATTTTAGCAAACGAGCTAGCTAC
CGAAATTTAGTGGAAAAAGCGTTATGACTTATGAGAAACTATTGTTCCCA
AATATCCCGTTGACGGAATTTTACCTCTTTTTCAGCTGGCCAATCATTTC
CTTGCAAACTGAAATCTAAATACGCAAAAGTCGGCATTGCAGACGAACTC
TTAATCAATCGGACATTTTCAAAGTACATAACAGGTTTGTATTGCTAATT
TCttcttgaaaaatgaattttgagtTCTTCTGTTAGAGGTCTGAAGATTA
AGCTTGAGAAGTTTGCGAGAATTTTCTAAAGGTAGGCTCACATgatacta
cacgctttttttataagaatattagggTGAGAATTGGCCAAAttgtaaga
ataccctaagctCTTGctctagggtgagtttcacagatTTTGATTGTTAt
acttaaggtatgtgtacaccttttttccgattttttgtcaaaaaaatttt
tttcagtcaaggtggaagaaaagttactggatttcattttggtaaaatcg
cgaccttaaaatctttttttgatccagagttataaccatttaaatttcaa
aacaaagttcgtcttatgatggattatttactcaaataattgtctctttc
ggaaacaacaaagacaaaagagagaattcagctgatgctaattctcacct
ctattgaatattAGTATTTTTGagacatttcactgattactcaaataaac
agcaatcatctcgttaaaaatttcaaattgatgtagaaaaaaacgaaatt
ttaccacacctcactacttttaacgaagttaaagtcacccatagcattta
gatatcgacttcattctttttttataagattcctaaaagatcaaacttaa
aaagtgtcttaggattttatttctaaacgagttgtttttcctcaatttgc
agataactgaaaaaatcacatttaaatttacttttttatcgatattttta
cagaatttaggatttaaagagttaaagtcaattccaaaaaaaatcccaag
acNNNNNNNNNNNNNNNNNNNNNNNNNNNNtattgggaacatagtatcga
aattattttttcaaaattcaaaagctatgggtgactttaacttctttgaa
gtaggtaaggttaaaattcttaagattttaattatatcctgcccagtttt
ttaaattcagctgaaacttttaccattagaaagagaatattacttttgat
atataaaaatttgttgttctaaagatatgatcaattaaagagaatgtgtc
aaggaaggtgaacacataccttaaattGAAACATTATAAggcaaaaatat
tattttaactcCCAATGTTTAACTCCCAACATTCAAtctgatcatttctc
atgtttgtttaaaagtcaagtctaaaaaggTAAGTATAAAGTAAggatac
gttaagaatatttcatccTCAATCTTTTAAGAATACtggaccctcatcca
aagtacactattcttataaaaagcgtgtagtaaTGAATTTTCATTTGCAA
CTTGACTTATCTTGAAGACTCTCTACTGTTCAGGGCTCCCCCTTTCGCTT
ATCCAGTATTTGATGGAAAAATGACCGGTATTTTGGTATTTCGGAAAGGT
CGAATTTCCGGTATTCTTGTAGTACTcgtcagaaattttttttaccggTA
TTGATACATTTTTGACCGGTACGCTGGTATTTTCTTAAAGAATTACCCTT
ATTCCGTATTTTGTACCCTTGACAGCCCTTTCACTATAATAAATGATCAT
ACCAAATCTATAACTTTTGGTTTTATGAGATAATAAGTTGCATTCAAAAT
tcatcatttcattttcattaaaactaattttttacTGATGATGGTACTCT
GATGAAGCCGTAgcgtttaaaataaaaataaatttcaaaatgaatcaGAA
GCAGCTTCTGTTATTAAATCTATTACTCGAGATGTACGGaaggattgatt
tatttaatttataCATTTTATTCTATTGATTTTTTAGAGCTTTGGGATAG
CAACACGAGCGAACAATCAGAAAGTGCGAACGGAACCATTGACGCTacat
ctggtgaaaaaaggaaactCCCCGAGGTAAAATAAAGTCGATTTTACCTC
TGTTTTACGGACTACATACATTACCAGTAATATATTAAAAAGGTGTCTTt
atgtcagctcgatttgctaTATTGGGC

Coding sequence (CDS) from alignment at sc0004117:5136..8262+

>TCONS_00043314 ID=TCONS_00043314|Name=TCONS_00043314|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0004117:5136..8262+ (Clytia hemisphaerica)
ATGATCAACTTCCTTGGTGCTCAATACACTGGCTATCTCTCCAAGAATCA
TTCCTATCTTGTTTGTAAAAAACGGGAAGGTGCCAAGTACAAAACAGCAC
TTGAATGGGGTATTCCTGTCGTCAACGCTAAATGGCTTGGTGATATGATA
CAGACTGGCCAATCATTTCCTTGCAAACTGAAATCTAAATACGCAAAAGT
CGGCATTGCAGACGAACTCTTAATCAATCGGACATTTTCAAAGTACATAA
CAGAGCTTTGGGATAGCAACACGAGCGAACAATCAGAAAGTGCGAACGGA
ACCATTGACGCTacatctggtgaaaaaaggaaactCCCCGAGGTAAAATA
AATGATCAACTTCCTTGGTGCTCAATACACTGGCTATCTCTCCAAGAATC
ATTCCTATCTTGTTTGTAAAAAACGGGAAGGTGCCAAGTACAAAACAGCA
CTTGAATGGGGTATTCCTGTCGTCAACGCTAAATGGCTTGGTGATATGAT
ACAGACTGGCCAATCATTTCCTTGCAAACTGAAATCTAAATACGCAAAAG
TCGGCATTGCAGACGAACTCTTAATCAATCGGACATTTTCAAAGTACATA
ACAGAGCTTTGGGATAGCAACACGAGCGAACAATCAGAAAGTGCGAACGG
AACCATTGACGCTacatctggtgaaaaaaggaaactCCCCGAGGTAAAAT
AAATGATCAACTTCCTTGGTGCTCAATACACTGGCTATCTCTCCAAGAAT
CATTCCTATCTTGTTTGTAAAAAACGGGAAGGTGCCAAGTACAAAACAGC
ACTTGAATGGGGTATTCCTGTCGTCAACGCTAAATGGCTTGGTGATATGA
TACAGACTGGCCAATCATTTCCTTGCAAACTGAAATCTAAATACGCAAAA
GTCGGCATTGCAGACGAACTCTTAATCAATCGGACATTTTCAAAGTACAT
AACAGAGCTTTGGGATAGCAACACGAGCGAACAATCAGAAAGTGCGAACG
GAACCATTGACGCTacatctggtgaaaaaaggaaactCCCCGAGGTAAAA
TAAATGATCAACTTCCTTGGTGCTCAATACACTGGCTATCTCTCCAAGAA
TCATTCCTATCTTGTTTGTAAAAAACGGGAAGGTGCCAAGTACAAAACAG
CACTTGAATGGGGTATTCCTGTCGTCAACGCTAAATGGCTTGGTGATATG
ATACAGACTGGCCAATCATTTCCTTGCAAACTGAAATCTAAATACGCAAA
AGTCGGCATTGCAGACGAACTCTTAATCAATCGGACATTTTCAAAGTACA
TAACAGAGCTTTGGGATAGCAACACGAGCGAACAATCAGAAAGTGCGAAC
GGAACCATTGACGCTacatctggtgaaaaaaggaaactCCCCGAGGTAAA
ATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027022XLOC_027022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043314-exon-sc0004117-1491911889:5136..5339TCONS_00043314-exon-sc0004117-1491911889:5136..5339Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1510915933:5136..5339TCONS_00043314-exon-sc0004117-1510915933:5136..5339Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1575043694:5136..5339TCONS_00043314-exon-sc0004117-1575043694:5136..5339Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1491911889:5692..5774TCONS_00043314-exon-sc0004117-1491911889:5692..5774Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1510915933:5692..5774TCONS_00043314-exon-sc0004117-1510915933:5692..5774Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1575043694:5692..5774TCONS_00043314-exon-sc0004117-1575043694:5692..5774Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1491911889:6171..6269TCONS_00043314-exon-sc0004117-1491911889:6171..6269Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1510915933:6171..6269TCONS_00043314-exon-sc0004117-1510915933:6171..6269Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1575043694:6171..6269TCONS_00043314-exon-sc0004117-1575043694:6171..6269Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1491911889:8073..8262TCONS_00043314-exon-sc0004117-1491911889:8073..8262Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1510915933:8073..8262TCONS_00043314-exon-sc0004117-1510915933:8073..8262Clytia hemisphaericaexon
TCONS_00043314-exon-sc0004117-1575043694:8073..8262TCONS_00043314-exon-sc0004117-1575043694:8073..8262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043314-proteinTCONS_00043314-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004117supercontigsc0004117:5136..8262 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.104	23.2842	31.4134	31.3756	17.0777	15.8644	40.5166	37.9311	28.7559	33.0963	19.6858	22.791	14.0799	16.1578	15.5894	19.9697	30.1889	25.2153	12.3314	15.5923	18.6931	22.977	27.9315	23.0761	27.8157	31.9573	13.653	8.62933	18.3476	17.0535
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001357BRCT_dom
Blast
[Close]
BLAST of TCONS_00043314 vs. Swiss-Prot (Human)
Match: PAXI1 (PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 7.581e-16
Identity = 32/66 (48.48%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:   86 FTVTGYENKDRNLVKHMINFLGAQYTGYLSKNHSYLVCKKREGAKYKTALEWGIPVVNAKWLGDMI 283
             +VTG+ + DR+ +K M    GA+YTGYL ++++ L+CK+  G KY+ A EW IP VNA+WLGD++
Sbjct:  711 ISVTGFVDSDRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPTGLKYEKAKEWRIPCVNAQWLGDIL 776
The following BLAST results are available for this feature:
BLAST of TCONS_00043314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PAXI17.581e-1648.48PAX-interacting protein 1 OS=Homo sapiens GN=PAXIP... [more]
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