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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043315 ID=TCONS_00043315|Name=TCONS_00043315|organism=Clytia hemisphaerica|type=transcript|length=2176bp
NTTTTCTcctaataaaatttctatctaaCGTACTCAAGGTGAGCTTCCAT
TCAATGGTTACCATAACTACGaacataaataataaaattgcaGAACTATG
TCCTCATGACAACACTCCCTCGACAATGGAGATTGGTCCCCAATCTTTCG
AATAGTTTTCTTAAAATGGATCTATatcgttttcattttttttgttatat
tttggCATTGCTCGTAATGTTCTTCTTGCGTACTCTGAACCAACAGTTAA
TCGCTAAATGGCCAGGTTCTTGACAAACGTAACAAAGTTGGTCATTGCCC
ATGGTTTTGGACTTTATTGGgctttattttctgacatttctCTATCTCTC
GTAAAgggttttttccattttgacgaTTTTCTCTTTTCGATTGACAACTT
CAGCTTCAGTCTTCTAACAGCTTTTTCGTACGAATCAATCTCGTTCAGGA
ACAAATCATTTTGAGTGTTTTCGTCTAAACCAGCCATAAAGAAATCTAAC
TTTTCATCTGGTTTAACATTCAGCTCGGTAAACATTTGTTCCATTTTCTC
AACATATTCATCTAACGTAGATTGACCCTGTTTGATAGAATAGAGATCCT
TTCTCAAAAGAGATTCATTGTCAAACTCAGTAGTCAGACTTTCAATGGCT
TTATCATACGTATTTTTTCGCTCGTTGCTTAGTCCTCGGAAATACCATTT
TGGTCTTCGTCTCAAACGGGTTGGTAGTAGAGTCAGCCTCTGGTTGTCAC
TCAATTCAGCAACGGAAGACAGTTCATTAAAATCAGCTAAGAAAGATCTA
AAAGTCTTATCATACTCATCGAAAATCGGAAAGTCGTCGTGGTCAACGTT
TAGGTGATTCATATGATCTCAATTCAAATAGTTTGTACGATAAACATCAA
TGTGATTGGCTCATAAACAAAAGATGAGCAGTCGTGGACGTTTTCAATAG
TCACATCGTGTCCGACACAAGGTTGGTGGTTATCTGAAGAGCGGCCATCG
GTTTAAAAATCGATTGAATCCATGTTGGACGTTGCTATAGACGTTTAGTT
TCCACAAATAATCAAATCAGAGCATTAATAATTAAGTTGCTTGGGTTTGA
TTTAACCTGTGGTTTCTATACAACGTTTGTTCATTATTGTTCATAATTCG
GGGCGTGGCTCACGGTAATTTGGGTATCAATAAATCATAAGTTATACAGT
TTGAAAAATGGGTAAGCAATCANTTGTTCATAATTCGGGGCGTGGCTGAC
GGTAATTTGGGTATCAATAAATCATAAGTTATACAGTTTGAAAAATGGGT
AAgcaatcaaattttaatttgatgaaAGGCTGCTCGCAAGCAGGTGTATC
AAGTTTCAGTGAAAGGTGCATACATTTGAAGAGTTTGAAATCAGCTACAG
TTTGTTCTGGCTTGTTTTCAATTCACAAAGAttgtttgttattgttataA
TCTATGTCCATTGTACCGTCGATAGTGCAGCAACTAACTAGACGAGGAAA
TAATTGTCGTAGTTTTTCAATGTAGGTAAATCGTGGATTAGTGCCTCAGC
TGCCACTCGCCCAATGTCCGAACGTCCCGAGAGGATAATTGATTCGATAA
ATAAGGTCGAAATAGTCGGTTTCTCGTCGTACATCACTGCCAGAAGTTCA
TTTTAGATTCTTAAGGCGATAATTTGAACTTCTAGGTTTGTCTGAGCTTG
GAATTGTGCGAAGGTAAACGCAACTAGGCAAGCTAGgacaaaatgcaaag
tttgtATATCGCTGAAAGAACTTGTAAGTGAACTTGAGGTATTGAACAAT
GTCAAACTGTTCTAACAAGAACCACACCTACCATAGCGATTAAACAATTC
TCCAACAATACAGAAAGTGTTTCATATTCTATTCAAGTATTCAGCATTCA
AACAATTCGATTCGATTTCCAGCTGTTGTATGTTGTAAATGTTGAAATTT
Tcgttgtatttttttcaaagttcggtttttgaatttttgaatttttccat
gTTTTCATTGTGCATCTCCCTTATAATCTATCTCCATCAGGCTCATCCTC
TAAAGTTGAGCCCCCAGATGTCGCGGTGCGCCAGCCGGTTACTAAGGCTG
GGCCCACGGCAacaacatttttatttaaaagtttttccccGGATATCGGC
CTGACTGCCGTTAGAAGACAGGAGAT Run BLAST on NCBI protein sequence of TCONS_00043315-protein >TCONS_00043315-protein ID=TCONS_00043315-protein|Name=TCONS_00043315-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MNHLNVDHDDFPIFDEYDKTFRSFLADFNELSSVAELSDNQRLTLLPTRL
RRRPKWYFRGLSNERKNTYDKAIESLTTEFDNESLLRKDLYSIKQGQSTL
DEYVEKMEQMFTELNVKPDEKLDFFMAGLDENTQNDLFLNEIDSYEKAVR
RLKLKLSIEKRKSSKWKKPFTRDREMSENKAQ Run BLAST on NCBI transcript from alignment at sc0004117:1276..3451 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043315 ID=TCONS_00043315|Name=TCONS_00043315|organism=Clytia hemisphaerica|type=transcript|length=2176bp|location=Sequence derived from alignment at sc0004117:1276..3451 (Clytia hemisphaerica)
ATCTCCTGTCTTCTAACGGCAGTCAGGCCGATATCCggggaaaaactttt
aaataaaaatgttgtTGCCGTGGGCCCAGCCTTAGTAACCGGCTGGCGCA
CCGCGACATCTGGGGGCTCAACTTTAGAGGATGAGCCTGATGGAGATAGA
TTATAAGGGAGATGCACAATGAAAAcatggaaaaattcaaaaattcaaaa
accgaactttgaaaaaaatacaacgAAAATTTCAACATTTACAACATACA
ACAGCTGGAAATCGAATCGAATTGTTTGAATGCTGAATACTTGAATAGAA
TATGAAACACTTTCTGTATTGTTGGAGAATTGTTTAATCGCTATGGTAGG
TGTGGTTCTTGTTAGAACAGTTTGACATTGTTCAATACCTCAAGTTCACT
TACAAGTTCTTTCAGCGATATacaaactttgcattttgtcCTAGCTTGCC
TAGTTGCGTTTACCTTCGCACAATTCCAAGCTCAGACAAACCTAGAAGTT
CAAATTATCGCCTTAAGAATCTAAAATGAACTTCTGGCAGTGATGTACGA
CGAGAAACCGACTATTTCGACCTTATTTATCGAATCAATTATCCTCTCGG
GACGTTCGGACATTGGGCGAGTGGCAGCTGAGGCACTAATCCACGATTTA
CCTACATTGAAAAACTACGACAATTATTTCCTCGTCTAGTTAGTTGCTGC
ACTATCGACGGTACAATGGACATAGATtataacaataacaaacaaTCTTT
GTGAATTGAAAACAAGCCAGAACAAACTGTAGCTGATTTCAAACTCTTCA
AATGTATGCACCTTTCACTGAAACTTGATACACCTGCTTGCGAGCAGCCT
ttcatcaaattaaaatttgattgcTTACCCATTTTTCAAACTGTATAACT
TATGATTTATTGATACCCAAATTACCGTCAGCCACGCCCCGAATTATGAA
CAANTGATTGCTTACCCATTTTTCAAACTGTATAACTTATGATTTATTGA
TACCCAAATTACCGTGAGCCACGCCCCGAATTATGAACAATAATGAACAA
ACGTTGTATAGAAACCACAGGTTAAATCAAACCCAAGCAACTTAATTATT
AATGCTCTGATTTGATTATTTGTGGAAACTAAACGTCTATAGCAACGTCC
AACATGGATTCAATCGATTTTTAAACCGATGGCCGCTCTTCAGATAACCA
CCAACCTTGTGTCGGACACGATGTGACTATTGAAAACGTCCACGACTGCT
CATCTTTTGTTTATGAGCCAATCACATTGATGTTTATCGTACAAACTATT
TGAATTGAGATCATATGAATCACCTAAACGTTGACCACGACGACTTTCCG
ATTTTCGATGAGTATGATAAGACTTTTAGATCTTTCTTAGCTGATTTTAA
TGAACTGTCTTCCGTTGCTGAATTGAGTGACAACCAGAGGCTGACTCTAC
TACCAACCCGTTTGAGACGAAGACCAAAATGGTATTTCCGAGGACTAAGC
AACGAGCGAAAAAATACGTATGATAAAGCCATTGAAAGTCTGACTACTGA
GTTTGACAATGAATCTCTTTTGAGAAAGGATCTCTATTCTATCAAACAGG
GTCAATCTACGTTAGATGAATATGTTGAGAAAATGGAACAAATGTTTACC
GAGCTGAATGTTAAACCAGATGAAAAGTTAGATTTCTTTATGGCTGGTTT
AGACGAAAACACTCAAAATGATTTGTTCCTGAACGAGATTGATTCGTACG
AAAAAGCTGTTAGAAGACTGAAGCTGAAGTTGTCAATCGAAAAGAGAAAA
tcgtcaaaatggaaaaaacccTTTACGAGAGATAGagaaatgtcagaaaa
taaagcCCAATAAAGTCCAAAACCATGGGCAATGACCAACTTTGTTACGT
TTGTCAAGAACCTGGCCATTTAGCGATTAACTGTTGGTTCAGAGTACGCA
AGAAGAACATTACGAGCAATGccaaaatataacaaaaaaaatgaaaacga
tATAGATCCATTTTAAGAAAACTATTCGAAAGATTGGGGACCAATCTCCA
TTGTCGAGGGAGTGTTGTCATGAGGACATAGTTCtgcaattttattattt
atgttCGTAGTTATGGTAACCATTGAATGGAAGCTCACCTTGAGTACGtt
agatagaaattttattaggAGAAAAN Coding sequence (CDS) from alignment at sc0004117:1276..3451 >TCONS_00043315 ID=TCONS_00043315|Name=TCONS_00043315|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at sc0004117:1276..3451 (Clytia hemisphaerica)
ATGAATCACCTAAACGTTGACCACGACGACTTTCCGATTTTCGATGAGTA
TGATAAGACTTTTAGATCTTTCTTAGCTGATTTTAATGAACTGTCTTCCG
TTGCTGAATTGAGTGACAACCAGAGGCTGACTCTACTACCAACCCGTTTG
AGACGAAGACCAAAATGGTATTTCCGAGGACTAAGCAACGAGCGAAAAAA
TACGTATGATAAAGCCATTGAAAGTCTGACTACTGAGTTTGACAATGAAT
CTCTTTTGAGAAAGGATCTCTATTCTATCAAACAGGGTCAATCTACGTTA
GATGAATATGTTGAGAAAATGGAACAAATGTTTACCGAGCTGAATGTTAA
ACCAGATGAAAAGTTAGATTTCTTTATGGCTGGTTTAGACGAAAACACTC
AAAATGATTTGTTCCTGAACGAGATTGATTCGTACGAAAAAGCTGTTAGA
AGACTGAAGCTGAAGTTGTCAATCGAAAAGAGAAAAtcgtcaaaatggaa
aaaacccTTTACGAGAGATAGagaaatgtcagaaaataaagcCCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043315-exon-sc0004117-1491911889:1276..3451 | TCONS_00043315-exon-sc0004117-1491911889:1276..3451 | Clytia hemisphaerica | exon |
| TCONS_00043315-exon-sc0004117-1510915933:1276..3451 | TCONS_00043315-exon-sc0004117-1510915933:1276..3451 | Clytia hemisphaerica | exon |
| TCONS_00043315-exon-sc0004117-1575043694:1276..3451 | TCONS_00043315-exon-sc0004117-1575043694:1276..3451 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004117 | supercontig | sc0004117:1276..3451 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005162 | Retrotrans_gag_dom |
Blast
The following BLAST results are available for this feature:
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