TCONS_00043322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043322
Unique NameTCONS_00043322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length456

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043322 ID=TCONS_00043322|Name=TCONS_00043322|organism=Clytia hemisphaerica|type=transcript|length=456bp
TGGAGATCTGAATATCTCCCAACACTGACAACAAGAGGCAAATGGGTCGA
AGAAAGGAGAAACCtgcaagttggtgatatggtcCTCCTGCACATGGATG
CACCAAGAGGACAATGGCCACTTGGTATTATTGTGGAAACAATACCCGGA
CGAGACAATCGAATTCGAATGGCGTATGTAAAGACGTATGCTGGTACATA
CCTCCGACCCACTTCGAAGATTTACAGACTGGAACTTCCCAACGTTCGTT
AAggggaggggtatattgtaaaaCATCTTGTGTTACTACTGACTTCGACG
CACGCTCCACCAAAGGagcttttctttgtgtttaattGCTGCTGAACTGA
CGTCATTTTCCCAAATGACATGCagaattttgtttacatttaaaaTGAAT
AGTTTATTTGATACACGTATTAATTCCCAAATGACTTACAAGAATTTGTT
TGTAAT
Run BLAST on NCBI

transcript from alignment at sc0004123:8819..9274

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043322 ID=TCONS_00043322|Name=TCONS_00043322|organism=Clytia hemisphaerica|type=transcript|length=456bp|location=Sequence derived from alignment at sc0004123:8819..9274 (Clytia hemisphaerica)
ATTACAAACAAATTCTTGTAAGTCATTTGGGAATTAATACGTGTATCAAA
TAAACTATTCAttttaaatgtaaacaaaattctGCATGTCATTTGGGAAA
ATGACGTCAGTTCAGCAGCaattaaacacaaagaaaagctCCTTTGGTGG
AGCGTGCGTCGAAGTCAGTAGTAACACAAGATGttttacaatatacccct
ccccTTAACGAACGTTGGGAAGTTCCAGTCTGTAAATCTTCGAAGTGGGT
CGGAGGTATGTACCAGCATACGTCTTTACATACGCCATTCGAATTCGATT
GTCTCGTCCGGGTATTGTTTCCACAATAATACCAAGTGGCCATTGTCCTC
TTGGTGCATCCATGTGCAGGAGgaccatatcaccaacttgcaGGTTTCTC
CTTTCTTCGACCCATTTGCCTCTTGTTGTCAGTGTTGGGAGATATTCAGA
TCTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027030XLOC_027030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043322-exon-sc0004123-1491911889:8819..9274TCONS_00043322-exon-sc0004123-1491911889:8819..9274Clytia hemisphaericaexon
TCONS_00043322-exon-sc0004123-1510915933:8819..9274TCONS_00043322-exon-sc0004123-1510915933:8819..9274Clytia hemisphaericaexon
TCONS_00043322-exon-sc0004123-1575043694:8819..9274TCONS_00043322-exon-sc0004123-1575043694:8819..9274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004123supercontigsc0004123:8819..9274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430904	0.744754	0	0	0	0.153064	0.36933	0.345762	0.121038	0.865623	2.88415	0.109783	0.764215	1.70808	0.489363	0.106779	0.53913	1.51918	0.152687	0.319551	0	1.4225	1.03933	1.55941	0.77107	1.23869	0.739933	1.68154	3.12918	2.21331
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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