TCONS_00043325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043325
Unique NameTCONS_00043325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043325 ID=TCONS_00043325|Name=TCONS_00043325|organism=Clytia hemisphaerica|type=transcript|length=470bp
CCTTCATGGTGCATCTTGTTGACAAATTCTCTGTCCATTATTATCTGATG
TTCTAACGCATAAATACTTCTGGGGTACACGACAACAATTATTATGTGGT
AAAGTGATTGCTGACTGGATTGATACAGATCGTAATACAGCCATTGATCC
AATATTTGGTGCCTTGTTATGCCCATGTGGAGGTCGAGTTGGACCAGGAG
ATGCAGGTTGGATGCACAGCGTGTTCTTTGACGACCGTGGGTTCATGGCA
TATCATTCTGCTGTTCACGACGCTTTCGGATATCTCATCACTTACCATGG
GAAAGGTCCCGGATACGACtatatgaaaaaatcaaaattgggTAGATTTA
ATCCTTTATCTGGCCAGTATGATGGTATAAGTTTTTGGAGAAATtacctg
aaaatgaaagtgatgcCAGATGATTTAGTTCGAAGTACTTTCGTCATGAT
TTTTGGTGGAATAAATTCAN
Run BLAST on NCBI

transcript from alignment at sc0004124:6450..7847-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043325 ID=TCONS_00043325|Name=TCONS_00043325|organism=Clytia hemisphaerica|type=transcript|length=1398bp|location=Sequence derived from alignment at sc0004124:6450..7847- (Clytia hemisphaerica)
CCTTCATGGTGCATCTTGTTGACAAATTCTCTGTCCATGTATGAGCTAAA
TTTTCCAATTTTATTTTTATTTTCTACATTCTTCACAGTACACTATCTTT
CTGAACAACCTATACACTACACTTTGAGTTTGGGAAGTCGGAAAACCATG
CATTCTATATCTTTGTACACCCCCGGTGGAACTTTTTCATTTTTTCTATC
GAAATCCCAATGACAATAGAAATTCTCTTGTTCCCAGGTCAAAAATCACG
TAGGATGGTCTCTTGGAGTGCAATTTTCTCCCATTTCAAATGGGGAGGAA
AGAAATTAAACTTTTCAGTGGAGCTGAAGTTGTAGGGTATTTCTCCTACC
AAGGATGAAATTTCCAAATTTTCCAGTAGGTAGGGGTCTCTCTTGGTCTG
TGACACAGTGATGTTTTAATTTCAATTTTCTTTTCATCTAATAGTATTAT
CTGATGTTCTAACGCATAAATACTTCTGGGGTACACGACAACAATTATTA
TGTGGTAAAGTGATTGCTGACTGGATTGATACAGATCGTAATACAGCCAT
TGATCCAATATTTGGTGCCTTGTTATGCCCATGTGGAGGTAAGGAAATTC
AGAAATTCGCTTTTTTGCTTTTCCTAGAAAAAGAAATTCATAGGATTTTT
TCTATTCCTTGTTCAACACTCCTTATTATTGACCTGGTGATATTAACCCT
TCCCTGGAAAAGATGCCGAATATCGCGATCAGAAAAATGTCCCGATAATT
TATCCTGATGAAAATTCAAGAAACCTTTCTCCCCACTTGAACAGACGCTA
AAAATTTTAGAACTCCTAAATAACTTCCGAGATATGAACAAAAGAGTTTA
CCCATATTTAATCTTGAACAAAGACTCTCCTAATGTTAGAAAACCATTAT
TATAGATGTCAATTCTTTTGGGCATAGTTAATGATAGACTAACAATTTTC
TGCCTTTCCAGAGGAAAACTGCATGATTGGTGCTCATTTAAACGGTAAAC
GGGGTTGTTTGGAAAGTTCTTTCGCCGAAATAGGGCAATTCTTTGACAGC
TTTATTTCTTAGCTACTCAAAATATGAGAAATTAATGTTATTTCCTTTTT
TACAAAACAGGTCGAGTTGGACCAGGAGATGCAGGTTGGATGCACAGCGT
GTTCTTTGACGACCGTGGGTTCATGGCATATCATTCTGCTGTTCACGACG
CTTTCGGATATCTCATCACTTACCATGGGAAAGGTCCCGGATACGACTAT
ATGAAAAAATCAAAATTGGGTAGATTTAATCCTTTATCTGGCCAGTATGA
TGGTATAAGTTTTTGGAGAAATTACCTGAAAATGAAAGTGATGCCAGATG
ATTTAGTTCGAAGTACTTTCGTCATGATTTTTGGTGGAATAAATTCAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027033XLOC_027033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043325-exon-sc0004124-1575043694:7810..7847TCONS_00043325-exon-sc0004124-1575043694:7810..7847Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1575043694:7260..7403TCONS_00043325-exon-sc0004124-1575043694:7260..7403Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1575043694:6450..6737TCONS_00043325-exon-sc0004124-1575043694:6450..6737Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1510915933:7810..7847TCONS_00043325-exon-sc0004124-1510915933:7810..7847Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1510915933:7260..7403TCONS_00043325-exon-sc0004124-1510915933:7260..7403Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1510915933:6450..6737TCONS_00043325-exon-sc0004124-1510915933:6450..6737Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1491911889:7810..7847TCONS_00043325-exon-sc0004124-1491911889:7810..7847Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1491911889:7260..7403TCONS_00043325-exon-sc0004124-1491911889:7260..7403Clytia hemisphaericaexon
TCONS_00043325-exon-sc0004124-1491911889:6450..6737TCONS_00043325-exon-sc0004124-1491911889:6450..6737Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004124supercontigsc0004124:6450..7847 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.16923	0	0	0	5.70378	2.94784	3.96865	3.81136	0.782299	7.4261	7.21835	4.59141	1.72426	2.19299	0.593573	0.646957	4.87794	3.64671	0.885149	2.6067	0.428739	0	0	0	0.291884	0.13025	0	0	0.0443949	0.678653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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