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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043326 ID=TCONS_00043326|Name=TCONS_00043326|organism=Clytia hemisphaerica|type=transcript|length=532bp
GCCACCAAGAGATgtttaaagaaagaaacgaCTGAAGAATGTTATGAAAG
ATTAATGAAAGATAGTgaagaatttgagaaaatataCCACGAGAGAAATG
TATTATCTGATGTTCTAACGCATAAATACTTCTGGGGTACACGACAACAA
TTATTATGTGGTAAAGTGATTGCTGACTGGATTGATACAGATCGTAATAC
AGCCATTGATCCAATATTTGGTGCCTTGTTATGCCCATGTGGAGGTCGAG
TTGGACCAGGAGATGCAGGTTGGATGCACAGCGTGTTCTTTGACGACCGT
GGGTTCATGGCATATCATTCTGCTGTTCACGACGCTTTCGGATATCTCAT
CACTTACCATGGGAAAGGTCCCGGATACGACtatatgaaaaaatcaaaat
tgggTAGATTTAATCCTTTATCTGGCCAGTATGATGGTATAAGTTTTTGG
AGAAATtacctgaaaatgaaagtgatgcCAGATGATTTAGTTCGAAGTAC
TTTCGTCATGATTTTTGGTGGAATAAATTCAN Run BLAST on NCBI protein sequence of TCONS_00043326-protein >TCONS_00043326-protein ID=TCONS_00043326-protein|Name=TCONS_00043326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
ATKRCLKKETTEECYERLMKDSEEFEKIYHERNVLSDVLTHKYFWGTRQQ
LLCGKVIADWIDTDRNTAIDPIFGALLCPCGGRVGPGDAGWMHSVFFDDR
GFMAYHSAVHDAFGYLITYHGKGPGYDYMKKSKLGRFNPLSGQYDGISFW
RNYLKMKVMPDDLVRSTFVMIFGGINS Run BLAST on NCBI transcript from alignment at sc0004124:6450..8292- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043326 ID=TCONS_00043326|Name=TCONS_00043326|organism=Clytia hemisphaerica|type=transcript|length=1843bp|location=Sequence derived from alignment at sc0004124:6450..8292- (Clytia hemisphaerica)
GCCACCAAGAGATGTTTAAAGAAAGAAACGACTGAAGAATGTTATGAAAG
ATTAATGAAAGATAGTGAAGAATTTGAGAAAATATACCACGAGAGAAATG
GTGAGTCCAAGTTTTTCTTAAACGCTAGGGGCCTCGATTTGAACACGACC
TTATTTGAGAAAGAATTATAGTCTCAAAATTCGGACATTATAAGAAGAGA
AGGAAGACTCTCACGACCGGTCTTCACTTTCGCGCGACAGGAGCAAAAAC
TTTTTGAAGTTTTTGTGAGGTCATTGGTCCGTTGAAAAATGAAGCGATTC
CATTGGTCGAAATTGACGCAACGGACGAACTTCCTTCAACTTTTTTTTTT
GTTCGCACGAAACTCTTTTATGACGTAATCTTTTCTTCAGGCAAAAAAGG
TTAAGAAAAAAACTGTCTCTTATTTCGCGCGAAAGTGGAGGCTGGCCTTC
ATGGTGCATCTTGTTGACAAATTCTCTGTCCATGTATGAGCTAAATTTTC
CAATTTTATTTTTATTTTCTACATTCTTCACAGTACACTATCTTTCTGAA
CAACCTATACACTACACTTTGAGTTTGGGAAGTCGGAAAACCATGCATTC
TATATCTTTGTACACCCCCGGTGGAACTTTTTCATTTTTTCTATCGAAAT
CCCAATGACAATAGAAATTCTCTTGTTCCCAGGTCAAAAATCACGTAGGA
TGGTCTCTTGGAGTGCAATTTTCTCCCATTTCAAATGGGGAGGAAAGAAA
TTAAACTTTTCAGTGGAGCTGAAGTTGTAGGGTATTTCTCCTACCAAGGA
TGAAATTTCCAAATTTTCCAGTAGGTAGGGGTCTCTCTTGGTCTGTGACA
CAGTGATGTTTTAATTTCAATTTTCTTTTCATCTAATAGTATTATCTGAT
GTTCTAACGCATAAATACTTCTGGGGTACACGACAACAATTATTATGTGG
TAAAGTGATTGCTGACTGGATTGATACAGATCGTAATACAGCCATTGATC
CAATATTTGGTGCCTTGTTATGCCCATGTGGAGGTAAGGAAATTCAGAAA
TTCGCTTTTTTGCTTTTCCTAGAAAAAGAAATTCATAGGATTTTTTCTAT
TCCTTGTTCAACACTCCTTATTATTGACCTGGTGATATTAACCCTTCCCT
GGAAAAGATGCCGAATATCGCGATCAGAAAAATGTCCCGATAATTTATCC
TGATGAAAATTCAAGAAACCTTTCTCCCCACTTGAACAGACGCTAAAAAT
TTTAGAACTCCTAAATAACTTCCGAGATATGAACAAAAGAGTTTACCCAT
ATTTAATCTTGAACAAAGACTCTCCTAATGTTAGAAAACCATTATTATAG
ATGTCAATTCTTTTGGGCATAGTTAATGATAGACTAACAATTTTCTGCCT
TTCCAGAGGAAAACTGCATGATTGGTGCTCATTTAAACGGTAAACGGGGT
TGTTTGGAAAGTTCTTTCGCCGAAATAGGGCAATTCTTTGACAGCTTTAT
TTCTTAGCTACTCAAAATATGAGAAATTAATGTTATTTCCTTTTTTACAA
AACAGGTCGAGTTGGACCAGGAGATGCAGGTTGGATGCACAGCGTGTTCT
TTGACGACCGTGGGTTCATGGCATATCATTCTGCTGTTCACGACGCTTTC
GGATATCTCATCACTTACCATGGGAAAGGTCCCGGATACGACTATATGAA
AAAATCAAAATTGGGTAGATTTAATCCTTTATCTGGCCAGTATGATGGTA
TAAGTTTTTGGAGAAATTACCTGAAAATGAAAGTGATGCCAGATGATTTA
GTTCGAAGTACTTTCGTCATGATTTTTGGTGGAATAAATTCAN Coding sequence (CDS) from alignment at sc0004124:6450..8292- >TCONS_00043326 ID=TCONS_00043326|Name=TCONS_00043326|organism=Clytia hemisphaerica|type=CDS|length=1593bp|location=Sequence derived from alignment at sc0004124:6450..8292- (Clytia hemisphaerica)
GTCGAGTTGGACCAGGAGATGCAGGTTGGATGCACAGCGTGTTCTTTGAC
GACCGTGGGTTCATGGCATATCATTCTGCTGTTCACGACGCTTTCGGATA
TCTCATCACTTACCATGGGAAAGGTCCCGGATACGACTATATGAAAAAAT
CAAAATTGGGTAGATTTAATCCTTTATCTGGCCAGTATGATGGTATAAGT
TTTTGGAGAAATTACCTGAAAATGAAAGTGATGCCAGATGATTTAGTTCG
AAGTACTTTCGTCATGATTTTTGGTGGAATAAATTCATATTATCTGATGT
TCTAACGCATAAATACTTCTGGGGTACACGACAACAATTATTATGTGGTA
AAGTGATTGCTGACTGGATTGATACAGATCGTAATACAGCCATTGATCCA
ATATTTGGTGCCTTGTTATGCCCATGTGGAGGCCACCAAGAGATGTTTAA
AGAAAGAAACGACTGAAGAATGTTATGAAAGATTAATGAAAGATAGTGAA
GAATTTGAGAAAATATACCACGAGAGAAATGGTCGAGTTGGACCAGGAGA
TGCAGGTTGGATGCACAGCGTGTTCTTTGACGACCGTGGGTTCATGGCAT
ATCATTCTGCTGTTCACGACGCTTTCGGATATCTCATCACTTACCATGGG
AAAGGTCCCGGATACGACTATATGAAAAAATCAAAATTGGGTAGATTTAA
TCCTTTATCTGGCCAGTATGATGGTATAAGTTTTTGGAGAAATTACCTGA
AAATGAAAGTGATGCCAGATGATTTAGTTCGAAGTACTTTCGTCATGATT
TTTGGTGGAATAAATTCATATTATCTGATGTTCTAACGCATAAATACTTC
TGGGGTACACGACAACAATTATTATGTGGTAAAGTGATTGCTGACTGGAT
TGATACAGATCGTAATACAGCCATTGATCCAATATTTGGTGCCTTGTTAT
GCCCATGTGGAGGCCACCAAGAGATGTTTAAAGAAAGAAACGACTGAAGA
ATGTTATGAAAGATTAATGAAAGATAGTGAAGAATTTGAGAAAATATACC
ACGAGAGAAATGGTCGAGTTGGACCAGGAGATGCAGGTTGGATGCACAGC
GTGTTCTTTGACGACCGTGGGTTCATGGCATATCATTCTGCTGTTCACGA
CGCTTTCGGATATCTCATCACTTACCATGGGAAAGGTCCCGGATACGACT
ATATGAAAAAATCAAAATTGGGTAGATTTAATCCTTTATCTGGCCAGTAT
GATGGTATAAGTTTTTGGAGAAATTACCTGAAAATGAAAGTGATGCCAGA
TGATTTAGTTCGAAGTACTTTCGTCATGATTTTTGGTGGAATAAATTCAT
ATTATCTGATGTTCTAACGCATAAATACTTCTGGGGTACACGACAACAAT
TATTATGTGGTAAAGTGATTGCTGACTGGATTGATACAGATCGTAATACA
GCCATTGATCCAATATTTGGTGCCTTGTTATGCCCATGTGGAGGCCACCA
AGAGATGTTTAAAGAAAGAAACGACTGAAGAATGTTATGAAAGATTAATG
AAAGATAGTGAAGAATTTGAGAAAATATACCACGAGAGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043326-exon-sc0004124-1575043694:8193..8292 | TCONS_00043326-exon-sc0004124-1575043694:8193..8292 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1575043694:7260..7403 | TCONS_00043326-exon-sc0004124-1575043694:7260..7403 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1575043694:6450..6737 | TCONS_00043326-exon-sc0004124-1575043694:6450..6737 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1510915933:8193..8292 | TCONS_00043326-exon-sc0004124-1510915933:8193..8292 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1510915933:7260..7403 | TCONS_00043326-exon-sc0004124-1510915933:7260..7403 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1510915933:6450..6737 | TCONS_00043326-exon-sc0004124-1510915933:6450..6737 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1491911889:8193..8292 | TCONS_00043326-exon-sc0004124-1491911889:8193..8292 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1491911889:7260..7403 | TCONS_00043326-exon-sc0004124-1491911889:7260..7403 | Clytia hemisphaerica | exon |
| TCONS_00043326-exon-sc0004124-1491911889:6450..6737 | TCONS_00043326-exon-sc0004124-1491911889:6450..6737 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004124 | supercontig | sc0004124:6450..8292 - |
Blast
The following BLAST results are available for this feature:
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