TCONS_00043329 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043329
Unique NameTCONS_00043329
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043329 ID=TCONS_00043329|Name=TCONS_00043329|organism=Clytia hemisphaerica|type=transcript|length=244bp
TCAGGAAGCACTGAAAGATTTGTCCACTCAGAAACCAAGCCATGAcaaca
aaaagaagcaaaataaAAAGCATGAAGAGaagaaaaagaagaaacgccCT
TCCACAGATAAGAAACCACCCAGCAGTAATAAATCTACGCCCTCGTCATT
CCAAGGAAAAGAATCACTCAAGCGATCGATACATCAAACATTTTCTAATG
AAGACAACCACCAACAACCAAACGTTAAGAAGTCAAAGAATGGT
Run BLAST on NCBI

transcript from alignment at sc0004125:7135..7936-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043329 ID=TCONS_00043329|Name=TCONS_00043329|organism=Clytia hemisphaerica|type=transcript|length=802bp|location=Sequence derived from alignment at sc0004125:7135..7936- (Clytia hemisphaerica)
TCAGGAAGCACTGAAAGATTTGTCCACTCAGAAACCAAGCCATGACAACA
AAAAGAAGCAAAATAAAAAGCATGAAGAGGTTCGTATGTCTTTCTTGTAG
TCCATTCACTCCCACTAAAATACGTCTGGTTTATATCGAGTGTTTCAAAA
AATGTACAATTTTTCACCATCAGATAGAGGAAAGGTTTCTTTAACCGACC
ATAAGCAAAAAAAGACTTTGGATTCGGATTCTGCTGGTTTTCTTTTCTGA
AATCTAACTCAACACAGTTGAAATTGTCGATTCGTTAAGAATTTGCTCCT
CGTTGTTCAATGTACTTCTAAATGATCACAANAAATCTAACTCAACACAG
TTGAAATTGTCGATTCGTTAAGAATTTGCTCCTCGTTGTTCAATGTACTT
CTAAATGATCACATTTCTCTTATAACTTCTATTATTTGAACTTTCTATAT
TTCCAGTCTCCGTCAAGGAGAAACCCCCTCGTTGTACTTTCTATAATTCG
AATCTCTCTGTAATTCGAGCAAAGAAGATTCCCCCGTTCGAGTTCGAGTT
CGAATTCGAATTAGCGAGAGTCAACTGTATAACCCAACTGTAGTACGTTA
ATTATACCTTATTCACCTTATTCTTGATCTCCTTCAGAAGAAAAAGAAGA
AACGCCCTTCCACAGATAAGAAACCACCCAGCAGTAATAAATCTACGCCC
TCGTCATTCCAAGGAAAAGAATCACTCAAGCGATCGATACATCAAACATT
TTCTAATGAAGACAACCACCAACAACCAAACGTTAAGAAGTCAAAGAATG
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027035XLOC_027035Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043329-exon-sc0004125-1575043694:7858..7936TCONS_00043329-exon-sc0004125-1575043694:7858..7936Clytia hemisphaericaexon
TCONS_00043329-exon-sc0004125-1575043694:7135..7299TCONS_00043329-exon-sc0004125-1575043694:7135..7299Clytia hemisphaericaexon
TCONS_00043329-exon-sc0004125-1510915933:7858..7936TCONS_00043329-exon-sc0004125-1510915933:7858..7936Clytia hemisphaericaexon
TCONS_00043329-exon-sc0004125-1510915933:7135..7299TCONS_00043329-exon-sc0004125-1510915933:7135..7299Clytia hemisphaericaexon
TCONS_00043329-exon-sc0004125-1491911889:7858..7936TCONS_00043329-exon-sc0004125-1491911889:7858..7936Clytia hemisphaericaexon
TCONS_00043329-exon-sc0004125-1491911889:7135..7299TCONS_00043329-exon-sc0004125-1491911889:7135..7299Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004125supercontigsc0004125:7135..7936 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.7988	17.0786	12.3673	16.7226	61.4241	66.5152	50.9682	32.4873	24.147	22.3464	33.0534	17.4144	30.5114	37.4045	27.8823	40.8299	37.3587	41.2144	21.5194	15.3464	37.3961	25.3256	34.6379	21.0791	33.2513	39.1123	20.1529	26.8449	30.8097	18.5184
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043329 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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