TCONS_00043331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043331
Unique NameTCONS_00043331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043331 ID=TCONS_00043331|Name=TCONS_00043331|organism=Clytia hemisphaerica|type=transcript|length=408bp
AAGAGTGCATTTTCCACTGGTTGCCTTAGAAATATGATTTGTCACTTTCC
TGTGAAACCTTCATTAAAATGTACACCCTCCATCTGTGGAATAGTAAATT
GCGCATGAGGCACATGTCTCTTGGATGAATCATATGTTTATATTTACGCA
ATCGAAACATGTTTTACTCATTTACTACGGCCGCCTTTATAAGAAGTTAT
AATTATGGCCAATCAAAAGCTTTAAAGTGATTAGAAAAGCTTCGGATAGC
ATAAAAATAGAGACGTGAAAAATGTAACATGACACGACAAGTCTTATgat
ttatgttaatttatgTCTACGTGCTAAAACAGTAAACATTACTCAAACAC
TGCTATTACATTTTGATCATGttaatttatgataatttatgaGTCAGTGC
AGACCTAC
Run BLAST on NCBI

transcript from alignment at sc0004125:3371..3778

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043331 ID=TCONS_00043331|Name=TCONS_00043331|organism=Clytia hemisphaerica|type=transcript|length=408bp|location=Sequence derived from alignment at sc0004125:3371..3778 (Clytia hemisphaerica)
GTAGGTCTGCACTGACtcataaattatcataaattaaCATGATCAAAATG
TAATAGCAGTGTTTGAGTAATGTTTACTGTTTTAGCACGTAGAcataaat
taacataaatcATAAGACTTGTCGTGTCATGTTACATTTTTCACGTCTCT
ATTTTTATGCTATCCGAAGCTTTTCTAATCACTTTAAAGCTTTTGATTGG
CCATAATTATAACTTCTTATAAAGGCGGCCGTAGTAAATGAGTAAAACAT
GTTTCGATTGCGTAAATATAAACATATGATTCATCCAAGAGACATGTGCC
TCATGCGCAATTTACTATTCCACAGATGGAGGGTGTACATTTTAATGAAG
GTTTCACAGGAAAGTGACAAATCATATTTCTAAGGCAACCAGTGGAAAAT
GCACTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027037XLOC_027037Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043331-exon-sc0004125-1491911889:3371..3778TCONS_00043331-exon-sc0004125-1491911889:3371..3778Clytia hemisphaericaexon
TCONS_00043331-exon-sc0004125-1510915933:3371..3778TCONS_00043331-exon-sc0004125-1510915933:3371..3778Clytia hemisphaericaexon
TCONS_00043331-exon-sc0004125-1575043694:3371..3778TCONS_00043331-exon-sc0004125-1575043694:3371..3778Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004125supercontigsc0004125:3371..3778 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.173851	1.61486	1.18492	0.721262	0.379967	0.687622	0.214581	0	0.186088	0	0	0	0	0.202467	0.108639	0.267668	0	0	0	0.172371	0	0	0.743362	0	0.34166	0.244457	0	0.395754	0.201605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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