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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043340 ID=TCONS_00043340|Name=TCONS_00043340|organism=Clytia hemisphaerica|type=transcript|length=1276bp
CCACTGTCGTAAAAACTGGACCCCTTACTCTAAGTTAACGATAGACGGAG
AATGCAAAGGAATGGCGTCCTTTGATTTGACCTTCTTTGAAATCAATTGT
CAATGCGAGTAAGAAATCACAGTTTATCCATGAGTGATaatttatatttt
aatttttcagattaTCCTTTCACATTCAAACTCAATATGCATCTACGAGA
AGTCAAATACATACCTTGTAAAGACGAATCATTATTCAATACTTNATTCA
AACTCAATATGCATCTACGAGAAGTCAAATACATACCTTGTAAAGACGAA
TCATTATTCAATACTTTCAAAGAACACTTaccgtgtaatttacagaccag
ctTGACACACGATGCTGAcgaagcatatttatttttgaaagaactTATAA
CGAAAGTTGGTGAGTCAGCAACGTAAATTGTGATTTTAATGTTAACTGGT
TGGTAATGatgtttcattttgaatagACATCTCATTCCTGATCTTAATTT
AACGAAAGAATCAGAAACTTGAATCGTGGTTTTAATGTTAAGAAGGCGGC
AATGATGCTCCATTCTGAATGGACATGTCATTCCTCAGATGATATTCGGA
TTTAAATTTTACAGTtggcgctctctaatttgacCCTCAACCAAGGATAA
TCGGGATTTCCATCAAATAATAGAGCTTTGTTTATGAGAGTAGCTTATTG
acgaagattttcaaaattatcgaataatggagcgtatcgaatagtagtaT
TTCGAAATAGAGAGCTCCAACTGTAACTTTAATGTTAAGCCGGTGGCAAT
GATGCTCCATTCTGAATGGGCATGTCATTCCTCAGAGAATATTCTGACCT
TTGATTTAATGACTTTGACGGATAGGGAGGGATATTTAATCATGACTGAG
AAATTTTCAAGCACTGAAAAGGTTTTTTAGTTAGAAGTTATATggtttta
aaactgaaaaactgGTAGTTAAGTGCTTAATCCTTATATGCTCTTTGTAT
CAACTAACTTTTTAATTGAACAAAAAACCATTTTAGTGACGGAATAAATA
TGCCTGTTTCCAATTTTGACGATTAAGAGAATCAAATTTTCAACGCCCGG
GCTATATTGGGTACTTCCGcataaaacattacatcatgaatatcatgaat
tcaaaTTCATAACAATTTCAATGTTTGGATGGAATCCTTTTATAACCGCT
ATTTATAGAcattatcggagtttttgatttttctaaaaaagcgatgcatt
gtgggattgtttcgggggtattacaa Run BLAST on NCBI protein sequence of TCONS_00043340-protein >TCONS_00043340-protein ID=TCONS_00043340-protein|Name=TCONS_00043340-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MTCPFRMEHHCRLLNIKTTIQVSDSFVKLRSGMRCLFKMKHHYQPVNIKI
TIYVADSPTFVISSFKNKYASSASCVKLVCKLHGKCSLKVLNNDSSLQGM
YLTSRRCILSLNXVLNNDSSLQGMYLTSRRCILSLNVKG Run BLAST on NCBI transcript from alignment at sc0004132:6859..8134 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043340 ID=TCONS_00043340|Name=TCONS_00043340|organism=Clytia hemisphaerica|type=transcript|length=1276bp|location=Sequence derived from alignment at sc0004132:6859..8134 (Clytia hemisphaerica)
ttgtaatacccccgaaacaatcccacaatgcatcgcttttttagaaaaat
caaaaactccgataatgTCTATAAATAGCGGTTATAAAAGGATTCCATCC
AAACATTGAAATTGTTATGAAtttgaattcatgatattcatgatgtaatg
ttttatgCGGAAGTACCCAATATAGCCCGGGCGTTGAAAATTTGATTCTC
TTAATCGTCAAAATTGGAAACAGGCATATTTATTCCGTCACTAAAATGGT
TTTTTGTTCAATTAAAAAGTTAGTTGATACAAAGAGCATATAAGGATTAA
GCACTTAACTACcagtttttcagttttaaaaccATATAACTTCTAACTAA
AAAACCTTTTCAGTGCTTGAAAATTTCTCAGTCATGATTAAATATCCCTC
CCTATCCGTCAAAGTCATTAAATCAAAGGTCAGAATATTCTCTGAGGAAT
GACATGCCCATTCAGAATGGAGCATCATTGCCACCGGCTTAACATTAAAG
TTACAGTTGGAGCTCTCTATTTCGAAAtactactattcgatacgctccat
tattcgataattttgaaaatcttcgtCAATAAGCTACTCTCATAAACAAA
GCTCTATTATTTGATGGAAATCCCGATTATCCTTGGTTGAGGgtcaaatt
agagagcgccaACTGTAAAATTTAAATCCGAATATCATCTGAGGAATGAC
ATGTCCATTCAGAATGGAGCATCATTGCCGCCTTCTTAACATTAAAACCA
CGATTCAAGTTTCTGATTCTTTCGTTAAATTAAGATCAGGAATGAGATGT
ctattcaaaatgaaacatCATTACCAACCAGTTAACATTAAAATCACAAT
TTACGTTGCTGACTCACCAACTTTCGTTATAagttctttcaaaaataaat
atgcttcgTCAGCATCGTGTGTCAagctggtctgtaaattacacggtAAG
TGTTCTTTGAAAGTATTGAATAATGATTCGTCTTTACAAGGTATGTATTT
GACTTCTCGTAGATGCATATTGAGTTTGAATNAAGTATTGAATAATGATT
CGTCTTTACAAGGTATGTATTTGACTTCTCGTAGATGCATATTGAGTTTG
AATGTGAAAGGAtaatctgaaaaattaaaatataaattATCACTCATGGA
TAAACTGTGATTTCTTACTCGCATTGACAATTGATTTCAAAGAAGGTCAA
ATCAAAGGACGCCATTCCTTTGCATTCTCCGTCTATCGTTAACTTAGAGT
AAGGGGTCCAGTTTTTACGACAGTGG Coding sequence (CDS) from alignment at sc0004132:6859..8134 >TCONS_00043340 ID=TCONS_00043340|Name=TCONS_00043340|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0004132:6859..8134 (Clytia hemisphaerica)
ATGACATGTCCATTCAGAATGGAGCATCATTGCCGCCTTCTTAACATTAA
AACCACGATTCAAGTTTCTGATTCTTTCGTTAAATTAAGATCAGGAATGA
GATGTctattcaaaatgaaacatCATTACCAACCAGTTAACATTAAAATC
ACAATTTACGTTGCTGACTCACCAACTTTCGTTATAagttctttcaaaaa
taaatatgcttcgTCAGCATCGTGTGTCAagctggtctgtaaattacacg
gtAAGTGTTCTTTGAAAGTATTGAATAATGATTCGTCTTTACAAGGTATG
TATTTGACTTCTCGTAGATGCATATTGAGTTTGAATNAAGTATTGAATAA
TGATTCGTCTTTACAAGGTATGTATTTGACTTCTCGTAGATGCATATTGA
GTTTGAATGTGAAAGGAtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043340-exon-sc0004132-1491911889:6859..8134 | TCONS_00043340-exon-sc0004132-1491911889:6859..8134 | Clytia hemisphaerica | exon |
| TCONS_00043340-exon-sc0004132-1510915933:6859..8134 | TCONS_00043340-exon-sc0004132-1510915933:6859..8134 | Clytia hemisphaerica | exon |
| TCONS_00043340-exon-sc0004132-1575043694:6859..8134 | TCONS_00043340-exon-sc0004132-1575043694:6859..8134 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004132 | supercontig | sc0004132:6859..8134 . |
Blast
The following BLAST results are available for this feature:
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