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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043341 ID=TCONS_00043341|Name=TCONS_00043341|organism=Clytia hemisphaerica|type=transcript|length=605bp
TTTTAGAGTTACGCAACTAAATAATTCTTAAGCATGGGTGGCAAGATTCC
AGATAATGTGAAAATGGATTTGCGGTCTGTTTTATTAGCAGCCAGTGGTA
CAATGCAATCTAAATTGGCCAGAGAGTATTATGATATTATGGGTGAACAT
CTACCTATCAAATCACTtggcttcaaaaatatttatgagTTTCTCTTAGC
CTTGGAAGGGGACGTTTGTCGCATGGAATTCTCACTCAAGAACAACGATA
ATATTGTCTTTGCAATCTTGGATAACACTTCCTTTACTTCGGAACATGCT
AAGAAAGCCGCAGCAAAAACGATAACAGGGAGTGTACCACACAAATCTCC
TGAAGAAATTGCACTCATATCTGATGGCCAACCCGTTGGCAAATTAAAAC
CTTCAAGAAGCGATAGGAAGAACAAAAATAATGGaggttttaaaagaaaa
tcaccaaaaaagaTGGAACTTCCTCCACAGCCAATACAAACACCGATGGG
ACTCCCTAATCAGTTTGACTGGAACAGGCTGAACCAATTGACGAGAAATA
CAAGAGGCGAATACACTTTGATTGGAAGGCTGAACGGTATAAGAAATGAT
GTGAG Run BLAST on NCBI protein sequence of TCONS_00043341-protein >TCONS_00043341-protein ID=TCONS_00043341-protein|Name=TCONS_00043341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
MGGKIPDNVKMDLRSVLLAASGTMQSKLAREYYDIMGEHLPIKSLGFKNI
YEFLLALEGDVCRMEFSLKNNDNIVFAILDNTSFTSEHAKKAAAKTITGS
VPHKSPEEIALISDGQPVGKLKPSRSDRKNKNNGGFKRKSPKKMELPPQP
IQTPMGLPNQFDWNRLNQLTRNTRGEYTLIGRLNGIRNDV Run BLAST on NCBI transcript from alignment at sc0004133:3083..4502+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043341 ID=TCONS_00043341|Name=TCONS_00043341|organism=Clytia hemisphaerica|type=transcript|length=1420bp|location=Sequence derived from alignment at sc0004133:3083..4502+ (Clytia hemisphaerica)
TTTTAGAGTTACGCAACTAAATAATTCTTAAGCATGGGTGGCAAGATTCC
AGATAATGTGAAAATGGATTTGCGGTCTGTTTTATTAGCAGCCAGTGGTA
CAATGCAATCTAAATTGGCCAGAGAGTATTATGATATTATGGGTGAACAT
CTACCTATCAAATCACTtggcttcaaaaatatttatgagTTTCTCTTAGC
CTTGGAAGGGGACGTTTGTCGCATGGAATTCTCACTCAAGAACAACGATA
ATATTGTCTTTGCAATCTTGGATAACACTTCCTTTACTTCGGAACATGCT
AAGAAAGCCGCAGCAAAGtaagttttaaagttttatcatcaaagattttt
gaaaatttttacaggAACAAGATAGAATATTCAACAAATTAATAAGTATT
TCAATCACAAAAAGCGTATCCTTgatcaattttgaaaaagagaatGAATA
TTATTTTGCAAAACTTTGATGTattttgctttttaaaattccatgaaatt
gaaactctttgcaTTGTCTGGGGGGGTtgcatggttggcggaggagctgA
ATCAGCCCTTTTTTCGGATGGAGTGACAGAACTTGAcaaaaatttagacg
gaattttGGAAATTGGGCCCTCTGATAGAGATGGAAAATTgaacaatttt
agtgcggaaaaacagAATTTTGCAAATGTTTTCCGAAATTTCGGGATTAG
CAAAaattattctgaatttttgacaaaaatcttgaatttcaaaggaattt
ttggTGGCAGAATTTCAGTCCTTTTTTAGACAGTTTGACagaaattagga
aaaaaatTAGTGGAaatgcggaatcgggtacccccttaAACCCCTCTGTC
TgtccaaaattatattttcagtAAACAGAGAAAAGTTTTTCCCCAATATt
gggggacaagctggagtttttacaagctcttatgtgatttggttggtcgt
taagttaatttcattactttttctaaagaacacgtcatctctattacttc
gaatgaccaattagtgaagtatcttctaaaaactccagctcatcccaata
TTGATGTtccttgatttttcaagcattcctcatttgtgtttttttcttgC
ACTAAGtgaatatttgatttttttctcaacagAACGATAACAGGGAGTGT
ACCACACAAATCTCCTGAAGAAATTGCACTCATATCTGATGGCCAACCCG
TTGGCAAATTAAAACCTTCAAGAAGCGATAGGAAGAACAAAAATAATGGa
ggttttaaaagaaaatcaccaaaaaagaTGGAACTTCCTCCACAGCCAAT
ACAAACACCGATGGGACTCCCTAATCAGTTTGACTGGAACAGGCTGAACC
AATTGACGAGAAATACAAGAGGCGAATACACTTTGATTGGAAGGCTGAAC
GGTATAAGAAATGATGTGAG Coding sequence (CDS) from alignment at sc0004133:3083..4502+ >TCONS_00043341 ID=TCONS_00043341|Name=TCONS_00043341|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0004133:3083..4502+ (Clytia hemisphaerica)
ATGGGTGGCAAGATTCCAGATAATGTGAAAATGGATTTGCGGTCTGTTTT
ATTAGCAGCCAGTGGTACAATGCAATCTAAATTGGCCAGAGAGTATTATG
ATATTATGGGTGAACATCTACCTATCAAATCACTtggcttcaaaaatatt
tatgagTTTCTCTTAGCCTTGGAAGGGGACGTTTGTCGCATGGAATTCTC
ACTCAAGAACAACGATAATATTGTCTTTGCAATCTTGGATAACACTTCCT
TTACTTCGGAACATGCTAAGAAAGCCGCAGCAAAAACGATAACAGGGAGT
GTACCACACAAATCTCCTGAAGAAATTGCACTCATATCTGATGGCCAACC
CGTTGGCAAATTAAAACCTTCAAGAAGCGATAGGAAGAACAAAAATAATG
GaggttttaaaagaaaatcaccaaaaaagaTGGAACTTCCTCCACAGCCA
ATACAAACACCGATGGGACTCCCTAATCAGTTTGACTGGAACAGGCTGAA
CCAATTGACGAGAAATACAAGAGGCGAATACACTTTGATTGGAAGGCTGA
ACGGTATAAGAAATGATGTGATGGGTGGCAAGATTCCAGATAATGTGAAA
ATGGATTTGCGGTCTGTTTTATTAGCAGCCAGTGGTACAATGCAATCTAA
ATTGGCCAGAGAGTATTATGATATTATGGGTGAACATCTACCTATCAAAT
CACTtggcttcaaaaatatttatgagTTTCTCTTAGCCTTGGAAGGGGAC
GTTTGTCGCATGGAATTCTCACTCAAGAACAACGATAATATTGTCTTTGC
AATCTTGGATAACACTTCCTTTACTTCGGAACATGCTAAGAAAGCCGCAG
CAAAAACGATAACAGGGAGTGTACCACACAAATCTCCTGAAGAAATTGCA
CTCATATCTGATGGCCAACCCGTTGGCAAATTAAAACCTTCAAGAAGCGA
TAGGAAGAACAAAAATAATGGaggttttaaaagaaaatcaccaaaaaaga
TGGAACTTCCTCCACAGCCAATACAAACACCGATGGGACTCCCTAATCAG
TTTGACTGGAACAGGCTGAACCAATTGACGAGAAATACAAGAGGCGAATA
CACTTTGATTGGAAGGCTGAACGGTATAAGAAATGATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043341-exon-sc0004133-1491911889:3083..3399 | TCONS_00043341-exon-sc0004133-1491911889:3083..3399 | Clytia hemisphaerica | exon |
| TCONS_00043341-exon-sc0004133-1510915933:3083..3399 | TCONS_00043341-exon-sc0004133-1510915933:3083..3399 | Clytia hemisphaerica | exon |
| TCONS_00043341-exon-sc0004133-1575043694:3083..3399 | TCONS_00043341-exon-sc0004133-1575043694:3083..3399 | Clytia hemisphaerica | exon |
| TCONS_00043341-exon-sc0004133-1491911889:4215..4502 | TCONS_00043341-exon-sc0004133-1491911889:4215..4502 | Clytia hemisphaerica | exon |
| TCONS_00043341-exon-sc0004133-1510915933:4215..4502 | TCONS_00043341-exon-sc0004133-1510915933:4215..4502 | Clytia hemisphaerica | exon |
| TCONS_00043341-exon-sc0004133-1575043694:4215..4502 | TCONS_00043341-exon-sc0004133-1575043694:4215..4502 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004133 | supercontig | sc0004133:3083..4502 + |
Blast
The following BLAST results are available for this feature:
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