TCONS_00043342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043342
Unique NameTCONS_00043342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043342 ID=TCONS_00043342|Name=TCONS_00043342|organism=Clytia hemisphaerica|type=transcript|length=246bp
AGTGTCATAGGGATTTCAGAAACCAAAAGCCTTGTTGACACCGAAACAGA
AAGTCCTCTCGAAAAAAAAGAGGACTTTGCTATACCAGGTTACGAAAAGC
TTTTTACACCAACTGAATCTTCTAAAGGTGGAGTAGCCTTATATATTTCA
CACTCTTTCTTTTACAAACCTAGGACAGACCTAGACCAAGTTTGCTATTC
TTCATGTAGTCTTGAATCATGCTTTGCTGAAATTATCCTACCAAAC
Run BLAST on NCBI

transcript from alignment at sc0004133:7..252

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043342 ID=TCONS_00043342|Name=TCONS_00043342|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at sc0004133:7..252 (Clytia hemisphaerica)
GTTTGGTAGGATAATTTCAGCAAAGCATGATTCAAGACTACATGAAGAAT
AGCAAACTTGGTCTAGGTCTGTCCTAGGTTTGTAAAAGAAAGAGTGTGAA
ATATATAAGGCTACTCCACCTTTAGAAGATTCAGTTGGTGTAAAAAGCTT
TTCGTAACCTGGTATAGCAAAGTCCTCTTTTTTTTCGAGAGGACTTTCTG
TTTCGGTGTCAACAAGGCTTTTGGTTTCTGAAATCCCTATGACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027047XLOC_027047Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043342-exon-sc0004133-1491911889:7..252TCONS_00043342-exon-sc0004133-1491911889:7..252Clytia hemisphaericaexon
TCONS_00043342-exon-sc0004133-1510915933:7..252TCONS_00043342-exon-sc0004133-1510915933:7..252Clytia hemisphaericaexon
TCONS_00043342-exon-sc0004133-1575043694:7..252TCONS_00043342-exon-sc0004133-1575043694:7..252Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004133supercontigsc0004133:7..252 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91322	0.638588	8.3793	0	5.72228	4.24451	0.000461615	3.78915	1.68682	1.51424	0	0.891945	0.882152	3.63896	0	0	3.53541	1.28554	1.73682	0	0.905645	3.22972	0.936671	0.103466	7.34721	4.6671	1.89731	0.389565	2.72017	0.512952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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