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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043344 ID=TCONS_00043344|Name=TCONS_00043344|organism=Clytia hemisphaerica|type=transcript|length=1158bp
GATTAACGATATAACTCAACTCCCAAAGGACTAGCACTCACATAAACAGC
taattatttacatttttaaagCAATTACTAAAAGATAAACTAGGGAATAT
ATACAAAGGAAAACTACTGCAAAACGGCAGTAACACTCCCCACCGTCAAG
GGACTCACTTGACTAGACCAAAATAAAAACTATAACAACTCAACCAGACT
CAACCATCAACAAAGTAAAAAGACATTGTAAGAAACCAATCATCATAATC
TCCAATGTTCCCAATTCAACCTTTGATTGTATTTTGTCCTTTTATCATAG
TTGTTAGACACTTTGGTATTGATTTCAAGAAAACAACCGACTTCGTTAAA
AAGACTATCTGATAGGTCAATACTAGGAGGCCAGATGATTTCTTTCGTAT
TCACGCTGCCAACCTCAAACAAAGGTACACCAAATTCATCGGATGAAGGA
TCGGTGTCGACGGCTAGCAAAGAGTTTACGTCAGCGTCTCGCGAGAGGAT
AACTCCCGTGCTTAAAAGTAGTTCAATGTCAAAATTAAAAGCGGCGTTTG
AAATTATGACGTCGATAGGTGAAGGAACAACGTCGATGTCAAACGAACTA
ATAGCTTCGGCGTCGAACGAAGACATGATGTCAACGTTTTGCGAATCAAC
GAATTCAATTTCAAGTAAAAGAGTGACTTCTGCGCGGAGCGAAGGAAAAA
CGTTGGCGACAAAATCAGCAATGTCGGTGTCAGCTTTGGGAATGTCGACG
TAAGTGACAACGTCCTTGTCAGTGATGACCTTTGCGTCAGATGGAATGAT
GTCGCCGCCAGATGAAGAGATGACGTCGGCGTCAGATGTAGTGATGACGT
CGGCGTCAGATGAAGTNGTTTGGGAATGTCGACGTCAGTGACAACGTCCT
TGTCAGTGATGACCTTTGCGTCAGATGGAATGATGTCGCCGCCAGATGAA
GAGATGACGTCGGCGTCAGATAAGATAACGTCGGCGTCTTGTAAAGATTC
TTTCAGAACGAACGACTCCTTCCAAAACAGGTACGTCTCTTGTACCTCTG
CGACTTCCGAGTCAATAAAAGCGAATCGTTCCATAATTGTATCGTCCATA
TCATGAGTCCAATCTTCTCGTTGGCCGATATGTCTTACACAAGCTTTCGa
aatttcaa Run BLAST on NCBI protein sequence of TCONS_00043344-protein >TCONS_00043344-protein ID=TCONS_00043344-protein|Name=TCONS_00043344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
EISKACVRHIGQREDWTHDMDDTIMERFAFIDSEVAEVQETYLFWKESFV
LKESLQDADVILSDADVISSSGGDIIPSDAKVITDKDVVTDVDIPKXLHL
TPTSSLHLTPTSSLHLAATSFHLTQRSSLTRTLSLTSTFPKLTPTLLILS
PTFFLRSAQKSLFYLKLNSLIRKTLTSCLRSTPKLLVRLTSTLFLHLSTS Run BLAST on NCBI transcript from alignment at sc0004135:4165..5322 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043344 ID=TCONS_00043344|Name=TCONS_00043344|organism=Clytia hemisphaerica|type=transcript|length=1158bp|location=Sequence derived from alignment at sc0004135:4165..5322 (Clytia hemisphaerica)
ttgaaatttCGAAAGCTTGTGTAAGACATATCGGCCAACGAGAAGATTGG
ACTCATGATATGGACGATACAATTATGGAACGATTCGCTTTTATTGACTC
GGAAGTCGCAGAGGTACAAGAGACGTACCTGTTTTGGAAGGAGTCGTTCG
TTCTGAAAGAATCTTTACAAGACGCCGACGTTATCTTATCTGACGCCGAC
GTCATCTCTTCATCTGGCGGCGACATCATTCCATCTGACGCAAAGGTCAT
CACTGACAAGGACGTTGTCACTGACGTCGACATTCCCAAACNACTTCATC
TGACGCCGACGTCATCACTACATCTGACGCCGACGTCATCTCTTCATCTG
GCGGCGACATCATTCCATCTGACGCAAAGGTCATCACTGACAAGGACGTT
GTCACTTACGTCGACATTCCCAAAGCTGACACCGACATTGCTGATTTTGT
CGCCAACGTTTTTCCTTCGCTCCGCGCAGAAGTCACTCTTTTACTTGAAA
TTGAATTCGTTGATTCGCAAAACGTTGACATCATGTCTTCGTTCGACGCC
GAAGCTATTAGTTCGTTTGACATCGACGTTGTTCCTTCACCTATCGACGT
CATAATTTCAAACGCCGCTTTTAATTTTGACATTGAACTACTTTTAAGCA
CGGGAGTTATCCTCTCGCGAGACGCTGACGTAAACTCTTTGCTAGCCGTC
GACACCGATCCTTCATCCGATGAATTTGGTGTACCTTTGTTTGAGGTTGG
CAGCGTGAATACGAAAGAAATCATCTGGCCTCCTAGTATTGACCTATCAG
ATAGTCTTTTTAACGAAGTCGGTTGTTTTCTTGAAATCAATACCAAAGTG
TCTAACAACTATGATAAAAGGACAAAATACAATCAAAGGTTGAATTGGGA
ACATTGGAGATTATGATGATTGGTTTCTTACAATGTCTTTTTACTTTGTT
GATGGTTGAGTCTGGTTGAGTTGTTATAGTTTTTATTTTGGTCTAGTCAA
GTGAGTCCCTTGACGGTGGGGAGTGTTACTGCCGTTTTGCAGTAGTTTTC
CTTTGTATATATTCCCTAGTTTATCTTTTAGTAATTGctttaaaaatgta
aataattaGCTGTTTATGTGAGTGCTAGTCCTTTGGGAGTTGAGTTATAT
CGTTAATC Coding sequence (CDS) from alignment at sc0004135:4165..5322 >TCONS_00043344 ID=TCONS_00043344|Name=TCONS_00043344|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0004135:4165..5322 (Clytia hemisphaerica)
gaaatttCGAAAGCTTGTGTAAGACATATCGGCCAACGAGAAGATTGGAC
TCATGATATGGACGATACAATTATGGAACGATTCGCTTTTATTGACTCGG
AAGTCGCAGAGGTACAAGAGACGTACCTGTTTTGGAAGGAGTCGTTCGTT
CTGAAAGAATCTTTACAAGACGCCGACGTTATCTTATCTGACGCCGACGT
CATCTCTTCATCTGGCGGCGACATCATTCCATCTGACGCAAAGGTCATCA
CTGACAAGGACGTTGTCACTGACGTCGACATTCCCAAACNACTTCATCTG
ACGCCGACGTCATCACTACATCTGACGCCGACGTCATCTCTTCATCTGGC
GGCGACATCATTCCATCTGACGCAAAGGTCATCACTGACAAGGACGTTGT
CACTTACGTCGACATTCCCAAAGCTGACACCGACATTGCTGATTTTGTCG
CCAACGTTTTTCCTTCGCTCCGCGCAGAAGTCACTCTTTTACTTGAAATT
GAATTCGTTGATTCGCAAAACGTTGACATCATGTCTTCGTTCGACGCCGA
AGCTATTAGTTCGTTTGACATCGACGTTGTTCCTTCACCTATCGACGTCA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043344-exon-sc0004135-1491911889:4165..5322 | TCONS_00043344-exon-sc0004135-1491911889:4165..5322 | Clytia hemisphaerica | exon |
| TCONS_00043344-exon-sc0004135-1510915933:4165..5322 | TCONS_00043344-exon-sc0004135-1510915933:4165..5322 | Clytia hemisphaerica | exon |
| TCONS_00043344-exon-sc0004135-1575043694:4165..5322 | TCONS_00043344-exon-sc0004135-1575043694:4165..5322 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004135 | supercontig | sc0004135:4165..5322 . |
Blast
The following BLAST results are available for this feature:
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