|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043351 ID=TCONS_00043351|Name=TCONS_00043351|organism=Clytia hemisphaerica|type=transcript|length=894bp
ATNAGGGAATATTGTTATTGCGCCGGATACAAATACAAGCGTTCTACCAA
CCAATGACAATCAAGTTACCATTGATGACGTGGTTGCCGATAGTGACGAC
GAACCAATAGGAAAGAAGCCTCGTTTCGAAGTTACCAATGAAAATACAGA
AGATAAAATAGACGAGAATGTGGAGCAACAAGTGACAGATGTGCCTCCAG
TAGAACTTATCTTGAACATGAGTGAAATTATGCATAAAGCAAATACTGAA
GGAGTATGATTGTTAAACTATGCAAGAGGTTTcgtggataaaaaaatcaa
tGGGAATAATATAATCTGCTCCAATTGGAAGCTAAAAACGAAAGATACTG
ATGTAGTCAAGCTACATAAAACAgcgaaaaagagaaagaaagggTGGGTA
ATTGAACCAGCAGTTTTTACCTGAGAATCAAAGTGCTATCTGTTGTTGAA
ACTTTGGAAATTCTAAGTTTGAGACTCTCACTGATTTTATTGTTCAAAAG
ATATTGTTTGAAAGAGTAGAACCCTGCCCCTTTCTCATGATTTATACACA
CTTgacccacagatatcttataaaaaacggcGCTTTATAAGAAATAGTGT
ATCATTTTGCTTCAGTTAGGAACAAAGGAGCTCTAtctaattttttatat
aagatatctgcccggggggggtacttaggcaaatggagggtacgggatgt
gccgcccttaaaacttgaaagtccagctaagggtcggaaaaataggaaaa
tttcaactttttaccccctgaaagatcgaaaattggtcaaatttgtcccg
ctaagggtcgtaaaattcccaaaattttcctttgttttctcctttttagt
cccggtaagggtccaaagttcgaaagtcgggcggcacccccccc Run BLAST on NCBI transcript from alignment at sc0004144:9737..11109- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043351 ID=TCONS_00043351|Name=TCONS_00043351|organism=Clytia hemisphaerica|type=transcript|length=1373bp|location=Sequence derived from alignment at sc0004144:9737..11109- (Clytia hemisphaerica)
ATNAGGGAATATTGTTATTGCGCCGGATACAAATACAAGGTGACTTGGAC
TAATACTTGTATTAAACTTCTTCTATTAACTAGTATCTCACATACCCGAT
AACGACTTACAATTCACTTTTGAATCTGCTCAAAGTACGTTTTTCATAAG
GACGTCCAAATTTTTGTTGAAGCTCTCACATTTCTTAGCTTTCTGAGATT
TAAAATGTTCTTATCTTGTTCTTGATATTTTAGCCATTGAAGCCTTATGT
TCTTATATAAAAAGCCTCTTTCTGAGGTAGAATGTGATTGATGATAAATA
AGTTTNGCTAAATTTCATCATGCAAAAATGGCAAAAATTCGAAAATATCC
ATGATCACAAATCATCACGCCTCAAATTAATTTCGCTTTATCATGAATTA
CGCTAAACACGCAAAAAATGTTTGCATCAAAGCCAAGAAGGGAAAAAACA
TCAAGGCGCTAAAGCAACAAATTGTGAGCACATTTCGTTACCATTGTCGT
TNTTCTTTTCTACTTTAGCGTTCTACCAACCAATGACAATCAAGTTACCA
TTGATGACGTGGTTGCCGATAGTGACGACGAACCAATAGGAAAGAAGCCT
CGTTTCGAAGTTACCAATGAAAATACAGAAGATAAAATAGACGAGAATGT
GGAGCAACAAGTGACAGATGTGCCTCCAGTAGAACTTATCTTGAACATGA
GTGAAATTATGCATAAAGCAAATACTGAAGGAGTATGATTGTTAAACTAT
GCAAGAGGTTTCGTGGATAAAAAAATCAATGGGAATAATATAATCTGCTC
CAATTGGAAGCTAAAAACGAAAGATACTGATGTAGTCAAGCTACATAAAA
CAGCGAAAAAGAGAAAGAAAGGGTGGGTAATTGAACCAGCAGTTTTTACC
TGAGAATCAAAGTGCTATCTGTTGTTGAAACTTTGGAAATTCTAAGTTTG
AGACTCTCACTGATTTTATTGTTCAAAAGATATTGTTTGAAAGAGTAGAA
CCCTGCCCCTTTCTCATGATTTATACACACTTGACCCACAGATATCTTAT
AAAAAACGGCGCTTTATAAGAAATAGTGTATCATTTTGCTTCAGTTAGGA
ACAAAGGAGCTCTATCTAATTTTTTATATAAGATATCTGCCCGGGGGGGG
TACTTAGGCAAATGGAGGGTACGGGATGTGCCGCCCTTAAAACTTGAAAG
TCCAGCTAAGGGTCGGAAAAATAGGAAAATTTCAACTTTTTACCCCCTGA
AAGATCGAAAATTGGTCAAATTTGTCCCGCTAAGGGTCGTAAAATTCCCA
AAATTTTCCTTTGTTTTCTCCTTTTTAGTCCCGGTAAGGGTCCAAAGTTC
GAAAGTCGGGCGGCACCCCCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043351-exon-sc0004144-1575043694:11071..11109 | TCONS_00043351-exon-sc0004144-1575043694:11071..11109 | Clytia hemisphaerica | exon |
| TCONS_00043351-exon-sc0004144-1575043694:9737..10591 | TCONS_00043351-exon-sc0004144-1575043694:9737..10591 | Clytia hemisphaerica | exon |
| TCONS_00043351-exon-sc0004144-1510915933:11071..11109 | TCONS_00043351-exon-sc0004144-1510915933:11071..11109 | Clytia hemisphaerica | exon |
| TCONS_00043351-exon-sc0004144-1510915933:9737..10591 | TCONS_00043351-exon-sc0004144-1510915933:9737..10591 | Clytia hemisphaerica | exon |
| TCONS_00043351-exon-sc0004144-1491911889:11071..11109 | TCONS_00043351-exon-sc0004144-1491911889:11071..11109 | Clytia hemisphaerica | exon |
| TCONS_00043351-exon-sc0004144-1491911889:9737..10591 | TCONS_00043351-exon-sc0004144-1491911889:9737..10591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004144 | supercontig | sc0004144:9737..11109 - |
Blast
The following BLAST results are available for this feature:
|
