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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043355 ID=TCONS_00043355|Name=TCONS_00043355|organism=Clytia hemisphaerica|type=transcript|length=1332bp ttgtgtgaaactgcttataattttgctgttttttttattgaaaggattga aatgtttactgaacttctagtttgatggatgaacttgttcgataagaatg ataccaagaatttcattcaaggtttgttttgattattttacagatccggt gtcgaaattagaagacacATGTTGATATCAGACAATCCTACGAGATGTTA CAAACTCACTTCTCTGATGAGGACCAACAATCTGGGAATGAAAGTCAAGA CAATGATACTGAAGATGATAATGAAGATGATgaggatgaatttttttcgt ttctgaaaaacaataaaaagacTGATGTTGCACGAAATGTCAATCTTTCT TTGGAAGATTCGCTGATGCTTCACCTGGCTTTTGCAGAGAGACACCATCT GAGTAAATCAGCACTAAAAGATTTGTTAGCTTTAACAAAGCTCCATCTTC CCAAGCCTAACAACTTCCCTACAACTGTCAATTCACTTTACAGAAGTTTA AACATAAAAGATGAATTCCAAAAGcactatttttgtgaaaattgcaAACA AATTATCAACAAAAATGAAACATGTAAACACTGTAAAGATTCCAAGACAA GACATTTTATATATTCAAATGTTGAAGAAGAACTGAAAGGTATATTAAAA aggCCACATTTCCAAGAAGGATTTAAAGCACCCATGAAAAAGGTTGACAA TGTGCTGAGAGATTATTGTGATGGAAAGGTCTATCAAGACCTACTGGAAT CAGGAATCATTGGAAGTAATACCATCACATTGCAGATGAATTCAGATGGA GTGAAGATGTTCAGTTCATGTAATTACTCAGTATGGCCCATCTATCTAAG AATCAATGAACTTCCTCCTGCATTAAGGAAATTGAAAAAGTTCCGTGTTT TGGTTGGGATCTGGTTTGGAGAGGAAAAACCTTACATGAGGAGTTTCTTG CGTCCTTTAGTTGAAATGTTAAAGCAATGGTACTTTCAAGGTATCCAATT TACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGCTTAGCTCAT TGTTTGATCTCCccggtatgtttttttttcaattgaaataaataaattga taAGATACTCTTGTAACTAAAGCATAGTAATTTGCCCTGATAGGAGCTCA ATGTACCCAGACTTTTTTATTACACTAATACTCAAGTATTTAACGTGCAC AAAAAAGgcaaaaggaagaaaattaaaaaagaaaattattattaaaacta GCAAGGGGTCATTTgtatttgtatttatctttaaTCAAAGTTCATTCAAA TAATATTAATCCAATCTCTTCTTATATTAAAG Run BLAST on NCBI protein sequence of TCONS_00043355-protein >TCONS_00043355-protein ID=TCONS_00043355-protein|Name=TCONS_00043355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=298bp
MLQTHFSDEDQQSGNESQDNDTEDDNEDDEDEFFSFLKNNKKTDVARNVN LSLEDSLMLHLAFAERHHLSKSALKDLLALTKLHLPKPNNFPTTVNSLYR SLNIKDEFQKHYFCENCKQIINKNETCKHCKDSKTRHFIYSNVEEELKGI LKRPHFQEGFKAPMKKVDNVLRDYCDGKVYQDLLESGIIGSNTITLQMNS DGVKMFSSCNYSVWPIYLRINELPPALRKLKKFRVLVGIWFGEEKPYMRS FLRPLVEMLKQWYFQGIQFTYNGEQKCYKVLLLSSLFDLPGMFFFQLK Run BLAST on NCBI transcript from alignment at sc0004147:20..3819- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043355 ID=TCONS_00043355|Name=TCONS_00043355|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at sc0004147:20..3819- (Clytia hemisphaerica) TTGTGTGAAACTGCTTATAATTTTGCTGTTTTTTTTATTGAAAGGATTGA
AATGTTTACTGAACTTCTAGTTTGATGGATGAACTTGTTCGATAAGAATG
ATACCAAGAATTTCATTCAAGGTTTGTTTTGATTATTTTACAGATCCGGT
GTCGAAATTAGAAGACACATGTTGATATCAGACAATCCTACGGTAACTTG
CGCACAAGTGACGTCAAACGTCCATCGTTTTGCCACTAATTTATTTCGTT
TAAAAAGCCTACTCGGTGCAAAATAGAATTTGTGTATTTCATAATTTCCC
GTTCGCATTGAAATTAATGACTTAGAAGTTTTTGTGAAATGGTGGTTATC
AAATACCACGAAGTTGGGTACTTGCATCAGTGGAGGGAAACTTGCATATC
CCTTAAATGAATGACCTGTCTGGTCATTAAAATACAAAGCTAAATCAAAA
CAAAATGGTAGAGTACGACCCTCGACATGGCGCGAGAATTCTCGGGCCAA
AACTTTTATTGGAATTTGCGTAAAGCAAAAAATAGCAAAAAATAGCCCAA
ATCACGCATCATGCCTCAAATTTTTGCCCTATCACGCATCACGCCAAATT
CTTGATCACGCCATCACGCCAAAAAAAATCTCTAATCACGCAAGAAAAAA
GTCCCAATCACGCCATCACGCAAACCGCTGGGGGGGCCTCTCCACTGATG
CAAGTTACCCGACTTCACGGTACAAAATAATTATTGTCAAATAATAAATA
TTATTGTTTTATCTTTTATCATTACAGAGATGTTACAAACTCACTTCTCT
GATGAGGACCAACAATCTGGGAATGAAAGTCAAGACAATGATACTGAAGA
TGATAATGAAGATGATGAGGATGAATTTTTTTCGTTTCTGAAAAACAATA
AAAAGACTGATGTTGCACGAAATGTCAATCTTTCTTTGGAAGATTCGCTG
ATGCTTCACCTGGCTTTTGCAGAGAGACACCATCTGAGTAAATCAGCACT
AAAAGATTTGTTAGCTTTAACAAAGCTCCATCTTCCCAAGCCTAACAACT
TCCCTACAACTGTCAATTCACTTTACAGAAGTTTAAACATAAAAGATGAA
TTCCAAAAGCACTATTTTTGTGAAAATTGCAAACAAATTATCAACAAAAA
TGAAACATGTAAACACTGTAAAGATTCCAAGACAAGACATTTTATATATT
CAAATGTTGAAGAAGAACTGAAAGGTATATTAAAAAGTAAGTATTTTTTT
ATTCAACTTTAGCAGCTCAGCTCCAAATTGGGTACACGCTTTTTTTTTTA
TAAGAATAGTGTACTTTGGTTGAGGGTGAGCATTATTCTTATTTTTCTAT
TGTTCTAAACAATAGGCCTATTGTTTTAAACCCGAAATCTCACCCTGATA
TTCTTATAGAAGTTATTCTTATAAAAGAAAAAGCGTTTAATGTTTGAAAA
ATTTATCACAAAAAAAGCTAGGAAATATAAACTGCTAAAATTTCCAGCAG
GAGGCCAAAAATCAGCCAAGAAAGTTTGCCTTATTGTCTTCCATTATTTT
TACTGGGCATTTTTTCATTCTGATTTCCTTCAAACATAGCTCTTTTTCGG
ACCGATTTTGCCCAGAAATGAGGCATTCAAATGTCTGAATCATATGGAAT
TAAAAGTAAATTTTTTCTTTGCATATATATACAATATCTTAATATAACAG
GAGTAATATCTGAGGCCGAAAAAAATGCAAATCTTTAGATGTGAAACCAT
GAAACCATGAAACTTGACCTTCTGAGATATCTCTTGAGATGGCCAAAAAT
ATTTCAATATTTCGTACCCCCCCTTTTCGATTGAAAATATTTTGGAACCC
CCGAACTAAACCCTCAAAACAATTTTCGAACCCCCCTCTGAAATCCCACC
CCCTAGTAGATACTTTCTGACCACTCCCTTAGTCAAGACACAAGGTTTGA
TTTCAATTCATCATTTGCCCAATCACAGTGAGAGCTAGGCTGAAAATTTG
TTGCTAGGTTGACCAGTGTCTCTCGATTTAAAGTTGTTATCCTTTCTTAG
CATACATAGCACTCAACTGACAAAATATAATTTGATTTTTAGGGCCACAT
TTCCAAGAAGGATTTAAAGCACCCATGAAAAAGGTTGACAATGTGCTGAG
AGATTATTGTGATGGAAAGGTCTATCAAGACCTACTGGAATCAGGAATCA
TTGGAAGTAATACCATCACATTGCAGATGAATTCAGATGGAGTGAAGATG
TTCAGTTCATGTAATTACTCAGTATGGCCCATCTATCTAAGAATCAATGA
ACTTCCTCCTGCATTAAGGTAAATACTCTGATTTTCAACAAATACATTTT
AAAACACTTCTTCAGGAACTGTCGGGAAATTTGAATAGGAAGAAAATTGG
CTGAGTCGATTAGGTTAAACATTAATTAAAGACAAACTCAACACCGTAAA
CCTTCTCGCTTGTTTGGAATGAAATAATCTCATGCTTGTTTTGTCTTGAT
CACTATATTTAAATAAAGGAAAATCGAGATTATGAAAAGGTCTCCAATTT
TTAAGGTAGTAATATTTGAGAAAAAAGGAAATTCCCACCAAAGTTCAAAA
GGAAAGGTAGAGTTTTAACAAAAATAGCCTGGAAGTCTATAAACCCCACC
CAAATTGAAATATTTGATTACATTTAACAGATAGCCCAAAACCAACTTTC
TCTCCCAAACTTCAAATTTCAAAAAACAAGGAAATAACCAAAATTCCCAT
ATATTTGGACCATGATTGTAGGACCATAGCAAATTTTAGTTAATTATTTG
TTGCTATATTTTGTAGAAAATATAGCTTCATCAAATTTGTCAAACAATAT
TTTGGAATATTTCACATTGTTGAATTTCAATTCTGATCATTCAGGAAATT
GAAAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGAAAAACCTT
ACATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGCAATGGTAC
TTTCAAGGTAATGACAATGTTTGACCTGCCATAAATCTCCGGGGGGTACT
TAAGCGAATGGAGGGTACGGCATGTCCCGCACTTAAGGATACCTTTTTTT
TATTTCCATTTCCAAAGTCCCACTAGGAGTTGGAAAAAATCACCCTTGTA
TTGTAAGGCGCACGCCTAACCAACTGAGCTAACCATGCATTCTTGTTTCT
GGGATTCTTTTGAAAGCTTTTNTTTTTTTTCCATTTCCAAAGTCCCACTA
GGAGTTGGAAAAAATCACCCTTGTATTGTAAGGCGCACGCCTAACCAACT
GAGCTAACCATGCATTCTTGTTTCTGGGATTCTTTTGAAAGCTTTTCCTC
GAAAATAAAAATTTAGATTTTGTGACATAACTTTTTCATAAGCTTCAATA
AGCAAAACCTGCCAGAAAAACTTTTCACACTATTTTTATGCATTTTTCTA
TACCTAAGGTATCCAATTTACTTACAATGGAGAACAAAAATGTTACAAAG
TTCTGTTGCTTAGCTCATTGTTTGATCTCCCCGGTATGTTTTTTTTTCAA
TTGAAATAAATAAATTGATAAGATACTCTTGTAACTAAAGCATAGTAATT
TGCCCTGATAGGAGCTCAATGTACCCAGACTTTTTTATTACACTAATACT
CAAGTATTTAACGTGCACAAAAAAGGCAAAAGGAAGAAAATTAAAAAAGA
AAATTATTATTAAAACTAGCAAGGGGTCATTTGTATTTGTATTTATCTTT
AATCAAAGTTCATTCAAATAATATTAATCCAATCTCTTCTTATATTAAAG
Coding sequence (CDS) from alignment at sc0004147:20..3819- >TCONS_00043355 ID=TCONS_00043355|Name=TCONS_00043355|organism=Clytia hemisphaerica|type=CDS|length=3588bp|location=Sequence derived from alignment at sc0004147:20..3819- (Clytia hemisphaerica) GTATCCAATTTACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTG CTTAGCTCATTGTTTGATCTCCCCGGTATGTTTTTTTTTCAATTGAAATA AGAAATTGAAAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGAA AAACCTTACATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGCA ATGGTACTTTCAAGGGCCACATTTCCAAGAAGGATTTAAAGCACCCATGA AAAAGGTTGACAATGTGCTGAGAGATTATTGTGATGGAAAGGTCTATCAA GACCTACTGGAATCAGGAATCATTGGAAGTAATACCATCACATTGCAGAT GAATTCAGATGGAGTGAAGATGTTCAGTTCATGTAATTACTCAGTATGGC CCATCTATCTAAGAATCAATGAACTTCCTCCTGCATTAAGATGTTACAAA CTCACTTCTCTGATGAGGACCAACAATCTGGGAATGAAAGTCAAGACAAT GATACTGAAGATGATAATGAAGATGATGAGGATGAATTTTTTTCGTTTCT GAAAAACAATAAAAAGACTGATGTTGCACGAAATGTCAATCTTTCTTTGG AAGATTCGCTGATGCTTCACCTGGCTTTTGCAGAGAGACACCATCTGAGT AAATCAGCACTAAAAGATTTGTTAGCTTTAACAAAGCTCCATCTTCCCAA GCCTAACAACTTCCCTACAACTGTCAATTCACTTTACAGAAGTTTAAACA TAAAAGATGAATTCCAAAAGCACTATTTTTGTGAAAATTGCAAACAAATT ATCAACAAAAATGAAACATGTAAACACTGTAAAGATTCCAAGACAAGACA TTTTATATATTCAAATGTTGAAGAAGAACTGAAAGGTATATTAAAAAGTA TCCAATTTACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGCTT AGCTCATTGTTTGATCTCCCCGGTATGTTTTTTTTTCAATTGAAATAAGA AATTGAAAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGAAAAA CCTTACATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGCAATG GTACTTTCAAGGGCCACATTTCCAAGAAGGATTTAAAGCACCCATGAAAA AGGTTGACAATGTGCTGAGAGATTATTGTGATGGAAAGGTCTATCAAGAC CTACTGGAATCAGGAATCATTGGAAGTAATACCATCACATTGCAGATGAA TTCAGATGGAGTGAAGATGTTCAGTTCATGTAATTACTCAGTATGGCCCA TCTATCTAAGAATCAATGAACTTCCTCCTGCATTAAGATGTTACAAACTC ACTTCTCTGATGAGGACCAACAATCTGGGAATGAAAGTCAAGACAATGAT ACTGAAGATGATAATGAAGATGATGAGGATGAATTTTTTTCGTTTCTGAA AAACAATAAAAAGACTGATGTTGCACGAAATGTCAATCTTTCTTTGGAAG ATTCGCTGATGCTTCACCTGGCTTTTGCAGAGAGACACCATCTGAGTAAA TCAGCACTAAAAGATTTGTTAGCTTTAACAAAGCTCCATCTTCCCAAGCC TAACAACTTCCCTACAACTGTCAATTCACTTTACAGAAGTTTAAACATAA AAGATGAATTCCAAAAGCACTATTTTTGTGAAAATTGCAAACAAATTATC AACAAAAATGAAACATGTAAACACTGTAAAGATTCCAAGACAAGACATTT TATATATTCAAATGTTGAAGAAGAACTGAAAGGTATATTAAAAAGTATCC AATTTACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGCTTAGC TCATTGTTTGATCTCCCCGGTATGTTTTTTTTTCAATTGAAATAAGAAAT TGAAAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGAAAAACCT TACATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGCAATGGTA CTTTCAAGGGCCACATTTCCAAGAAGGATTTAAAGCACCCATGAAAAAGG TTGACAATGTGCTGAGAGATTATTGTGATGGAAAGGTCTATCAAGACCTA CTGGAATCAGGAATCATTGGAAGTAATACCATCACATTGCAGATGAATTC AGATGGAGTGAAGATGTTCAGTTCATGTAATTACTCAGTATGGCCCATCT ATCTAAGAATCAATGAACTTCCTCCTGCATTAAGATGTTACAAACTCACT TCTCTGATGAGGACCAACAATCTGGGAATGAAAGTCAAGACAATGATACT GAAGATGATAATGAAGATGATGAGGATGAATTTTTTTCGTTTCTGAAAAA CAATAAAAAGACTGATGTTGCACGAAATGTCAATCTTTCTTTGGAAGATT CGCTGATGCTTCACCTGGCTTTTGCAGAGAGACACCATCTGAGTAAATCA GCACTAAAAGATTTGTTAGCTTTAACAAAGCTCCATCTTCCCAAGCCTAA CAACTTCCCTACAACTGTCAATTCACTTTACAGAAGTTTAAACATAAAAG ATGAATTCCAAAAGCACTATTTTTGTGAAAATTGCAAACAAATTATCAAC AAAAATGAAACATGTAAACACTGTAAAGATTCCAAGACAAGACATTTTAT ATATTCAAATGTTGAAGAAGAACTGAAAGGTATATTAAAAAGTATCCAAT TTACTTACAATGGAGAACAAAAATGTTACAAAGTTCTGTTGCTTAGCTCA TTGTTTGATCTCCCCGGTATGTTTTTTTTTCAATTGAAATAAGAAATTGA AAAAGTTCCGTGTTTTGGTTGGGATCTGGTTTGGAGAGGAAAAACCTTAC ATGAGGAGTTTCTTGCGTCCTTTAGTTGAAATGTTAAAGCAATGGTACTT TCAAGGGCCACATTTCCAAGAAGGATTTAAAGCACCCATGAAAAAGGTTG ACAATGTGCTGAGAGATTATTGTGATGGAAAGGTCTATCAAGACCTACTG GAATCAGGAATCATTGGAAGTAATACCATCACATTGCAGATGAATTCAGA TGGAGTGAAGATGTTCAGTTCATGTAATTACTCAGTATGGCCCATCTATC TAAGAATCAATGAACTTCCTCCTGCATTAAGATGTTACAAACTCACTTCT CTGATGAGGACCAACAATCTGGGAATGAAAGTCAAGACAATGATACTGAA GATGATAATGAAGATGATGAGGATGAATTTTTTTCGTTTCTGAAAAACAA TAAAAAGACTGATGTTGCACGAAATGTCAATCTTTCTTTGGAAGATTCGC TGATGCTTCACCTGGCTTTTGCAGAGAGACACCATCTGAGTAAATCAGCA CTAAAAGATTTGTTAGCTTTAACAAAGCTCCATCTTCCCAAGCCTAACAA CTTCCCTACAACTGTCAATTCACTTTACAGAAGTTTAAACATAAAAGATG AATTCCAAAAGCACTATTTTTGTGAAAATTGCAAACAAATTATCAACAAA AATGAAACATGTAAACACTGTAAAGATTCCAAGACAAGACATTTTATATA TTCAAATGTTGAAGAAGAACTGAAAGGTATATTAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00043355-exon-sc0004147-1575043694:3628..3819 | TCONS_00043355-exon-sc0004147-1575043694:3628..3819 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1575043694:2584..3042 | TCONS_00043355-exon-sc0004147-1575043694:2584..3042 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1575043694:1502..1727 | TCONS_00043355-exon-sc0004147-1575043694:1502..1727 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1575043694:813..925 | TCONS_00043355-exon-sc0004147-1575043694:813..925 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1575043694:20..361 | TCONS_00043355-exon-sc0004147-1575043694:20..361 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1510915933:3628..3819 | TCONS_00043355-exon-sc0004147-1510915933:3628..3819 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1510915933:2584..3042 | TCONS_00043355-exon-sc0004147-1510915933:2584..3042 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1510915933:1502..1727 | TCONS_00043355-exon-sc0004147-1510915933:1502..1727 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1510915933:813..925 | TCONS_00043355-exon-sc0004147-1510915933:813..925 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1510915933:20..361 | TCONS_00043355-exon-sc0004147-1510915933:20..361 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1491911889:3628..3819 | TCONS_00043355-exon-sc0004147-1491911889:3628..3819 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1491911889:2584..3042 | TCONS_00043355-exon-sc0004147-1491911889:2584..3042 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1491911889:1502..1727 | TCONS_00043355-exon-sc0004147-1491911889:1502..1727 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1491911889:813..925 | TCONS_00043355-exon-sc0004147-1491911889:813..925 | Clytia hemisphaerica | exon |
TCONS_00043355-exon-sc0004147-1491911889:20..361 | TCONS_00043355-exon-sc0004147-1491911889:20..361 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0004147 | supercontig | sc0004147:20..3819 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR004242 | Transposase_21 |
Blast
The following BLAST results are available for this feature:
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