TCONS_00043361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043361
Unique NameTCONS_00043361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043361 ID=TCONS_00043361|Name=TCONS_00043361|organism=Clytia hemisphaerica|type=transcript|length=326bp
GAACCTGTTCATCAAAGATCAACCGATGGGTTCATGACATGATGCGATGC
TGTTACAAAGCTTGGCCAATTTTTGAATATAAACTAAATCTTAGACTGTG
TTGTGTATAATCATCAAGATTTCGTGAATGGGCTATCCGttgaaaaaaac
atattttatagACAGTCAACGGTGAAAAATTATGGATTATGTACGGATAA
ATTTGCTCTCACAACAGCACAGCTGCTTTAAGACtttataaaacaaatga
ttgtggttttttcttacaaaaatttaCTTCTGAATAGCATTACTCAAACT
CATTCTTCCTTTTAGTTGAATTTCAA
Run BLAST on NCBI

transcript from alignment at sc0004156:4164..4489

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043361 ID=TCONS_00043361|Name=TCONS_00043361|organism=Clytia hemisphaerica|type=transcript|length=326bp|location=Sequence derived from alignment at sc0004156:4164..4489 (Clytia hemisphaerica)
TTGAAATTCAACTAAAAGGAAGAATGAGTTTGAGTAATGCTATTCAGAAG
taaatttttgtaagaaaaaaccacaatcatttgttttataaaGTCTTAAA
GCAGCTGTGCTGTTGTGAGAGCAAATTTATCCGTACATAATCCATAATTT
TTCACCGTTGACTGTctataaaatatgtttttttcaaCGGATAGCCCATT
CACGAAATCTTGATGATTATACACAACACAGTCTAAGATTTAGTTTATAT
TCAAAAATTGGCCAAGCTTTGTAACAGCATCGCATCATGTCATGAACCCA
TCGGTTGATCTTTGATGAACAGGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027066XLOC_027066Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043361-exon-sc0004156-1491911889:4164..4489TCONS_00043361-exon-sc0004156-1491911889:4164..4489Clytia hemisphaericaexon
TCONS_00043361-exon-sc0004156-1510915933:4164..4489TCONS_00043361-exon-sc0004156-1510915933:4164..4489Clytia hemisphaericaexon
TCONS_00043361-exon-sc0004156-1575043694:4164..4489TCONS_00043361-exon-sc0004156-1575043694:4164..4489Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004156supercontigsc0004156:4164..4489 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.950922	0.825786	0	0	3.3085	0.985751	3.15966	2.36548	0.632664	1.02457	1.53597	0	0.620022	1.83156	1.34321	1.05397	0.473511	2.37055	2.28002	1.07034	0.340789	0.564172	0	0.966835	0.325545	0.581083	2.8131	1.01422	0.701512	1.67747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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