TCONS_00043365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043365
Unique NameTCONS_00043365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043365 ID=TCONS_00043365|Name=TCONS_00043365|organism=Clytia hemisphaerica|type=transcript|length=480bp
TTTAGTGTTAATCTTTTCACTCACTTTGTCTGCCACGTTACCCATACTGG
CtttgttgaaattttcttcACTAAAATGAGATAGGCGTTGTTTGAATTAC
CGCCTTCccggccatttttttgaaaattaccgttatcccgtccaaaattt
tcgaaaataccggtaaatttttaaatttattatttgacttgtttttggac
tttttaaaagtgaattttgacttccaAAGCTTAACTTGAGAActactgaa
ccaaatttaaaggTCATCAGCTTAGCCTAGTTTGCTAAGAATATATTTAA
TACTGGTAAAAAGCTCCAATGTGAAGCAGAGTACTGTTAGTttgaattaa
attgaaaataccTTGGTACTGTAAGATTAAAATGTCTTTTTATACAATTT
GATTTCTTCAGAAACGGTCGCTAAGAATACCTCTGACTCAACACCCTTTG
TCCGTTAtcagaaataaaaatcaaaaattt
Run BLAST on NCBI

transcript from alignment at sc0004158:7735..8214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043365 ID=TCONS_00043365|Name=TCONS_00043365|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0004158:7735..8214 (Clytia hemisphaerica)
aaatttttgatttttatttctgaTAACGGACAAAGGGTGTTGAGTCAGAG
GTATTCTTAGCGACCGTTTCTGAAGAAATCAAATTGTATAAAAAGACATT
TTAATCTTACAGTACCAAggtattttcaatttaattcaaACTAACAGTAC
TCTGCTTCACATTGGAGCTTTTTACCAGTATTAAATATATTCTTAGCAAA
CTAGGCTAAGCTGATGAcctttaaatttggttcagtagTTCTCAAGTTAA
GCTTtggaagtcaaaattcacttttaaaaagtccaaaaacaagtcaaata
ataaatttaaaaatttaccggtattttcgaaaattttggacgggataacg
gtaattttcaaaaaaatggccggGAAGGCGGTAATTCAAACAACGCCTAT
CTCATTTTAGTgaagaaaatttcaacaaaGCCAGTATGGGTAACGTGGCA
GACAAAGTGAGTGAAAAGATTAACACTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027070XLOC_027070Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043365-exon-sc0004158-1491911889:7735..8214TCONS_00043365-exon-sc0004158-1491911889:7735..8214Clytia hemisphaericaexon
TCONS_00043365-exon-sc0004158-1510915933:7735..8214TCONS_00043365-exon-sc0004158-1510915933:7735..8214Clytia hemisphaericaexon
TCONS_00043365-exon-sc0004158-1575043694:7735..8214TCONS_00043365-exon-sc0004158-1575043694:7735..8214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004158supercontigsc0004158:7735..8214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.412134	0.306772	0.807164	0.725089	1.05927	0.139508	0.170524	0.315141	0	0	0.663168	0.174376	0.174134	0.455068	0.364002	0	0.29483	0.479358	0.417494	0.291252	3.31888	4.10302	0.762744	1.92911	1.68668	1.25444	0.538528	0.383154	0	0.314494
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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