TCONS_00043366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043366
Unique NameTCONS_00043366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043366 ID=TCONS_00043366|Name=TCONS_00043366|organism=Clytia hemisphaerica|type=transcript|length=750bp
cttaaaatgttcttaacttgttcattatattttggccatcgaggccatat
gttcttatatagttttcatACAATTTGCAGTCTCATTCGTACCTTTCACA
TCCAAGGATTTCCGTATATACTGCATCCCGTAGTCATGTTCCGTTAGCGA
TTCAAGCATATCCAAACACNATTTCCGTATGTACTGCATCCCGTAGTCGT
GTTCCGTTAGCGATTCAAGCATATCCAAACATCGCATCAATAACGGTACC
GGTAAAGCGTGGTTGGCAGTCAATTGGAAACAGAATTCCACAATGGCTTC
CATGAAATCCCCTTGGGGAAGATGATTGGCTAAGTGTTGggaagtgatga
cgtcattggtttGAGTTAGACACACCTGATGATCACAGATCGAATGTAGG
ATCGGGAGAAGGCAATTCTCAAGGTAAAACCAGTCGGGCTCTTTAGCTTG
GAGAGCAATCGCATTGGGAATAAAAGCAGGGAACTCAGCTACCATTATTC
CCGATGATGACGTCACAGCGTTGAGGAAAGCAGCCTTACCCCCTGGTTGG
CAAACAATATAGGAGAGCATAGAAAAAGTGTTGTAGATGAACGGCGATAA
AGAACGTTTTTTGTCCTCGGTTGAAGATGGCGTCGCGTCTTTTTCTTTCT
CCACCTCAGACGTTGTGGCGGCATTTTCTTCTGCGGGCGGATCGGacgtt
gtcaatatttgggccATCGCTTCGTCCACCATCTCGCATAAGCATCTGTT
Run BLAST on NCBI

protein sequence of TCONS_00043366-protein

>TCONS_00043366-protein ID=TCONS_00043366-protein|Name=TCONS_00043366-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
NRCLCEMVDEAMAQILTTSDPPAEENAATTSEVEKEKDATPSSTEDKKRS
LSPFIYNTFSMLSYIVCQPGGKAAFLNAVTSSSGIMVAEFPAFIPNAIAL
QAKEPDWFYLENCLLPILHSICDHQVCLTQTNDVITSQHLANHLPQGDFM
EAIVEFCFQLTANHALPVPLLMRCLDMLESLTEHDYGMQYIRKXCLDMLE
SLTEHDYGMQYIRKSLDVKGTNETANCMKTI
Run BLAST on NCBI

transcript from alignment at sc0004160:6905..7654

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043366 ID=TCONS_00043366|Name=TCONS_00043366|organism=Clytia hemisphaerica|type=transcript|length=750bp|location=Sequence derived from alignment at sc0004160:6905..7654 (Clytia hemisphaerica)
AACAGATGCTTATGCGAGATGGTGGACGAAGCGATggcccaaatattgac
aacgtCCGATCCGCCCGCAGAAGAAAATGCCGCCACAACGTCTGAGGTGG
AGAAAGAAAAAGACGCGACGCCATCTTCAACCGAGGACAAAAAACGTTCT
TTATCGCCGTTCATCTACAACACTTTTTCTATGCTCTCCTATATTGTTTG
CCAACCAGGGGGTAAGGCTGCTTTCCTCAACGCTGTGACGTCATCATCGG
GAATAATGGTAGCTGAGTTCCCTGCTTTTATTCCCAATGCGATTGCTCTC
CAAGCTAAAGAGCCCGACTGGTTTTACCTTGAGAATTGCCTTCTCCCGAT
CCTACATTCGATCTGTGATCATCAGGTGTGTCTAACTCaaaccaatgacg
tcatcacttccCAACACTTAGCCAATCATCTTCCCCAAGGGGATTTCATG
GAAGCCATTGTGGAATTCTGTTTCCAATTGACTGCCAACCACGCTTTACC
GGTACCGTTATTGATGCGATGTTTGGATATGCTTGAATCGCTAACGGAAC
ACGACTACGGGATGCAGTACATACGGAAATNGTGTTTGGATATGCTTGAA
TCGCTAACGGAACATGACTACGGGATGCAGTATATACGGAAATCCTTGGA
TGTGAAAGGTACGAATGAGACTGCAAATTGTatgaaaactatataagaac
atatggcctcgatggccaaaatataatgaacaagttaagaacattttaag

Coding sequence (CDS) from alignment at sc0004160:6905..7654

>TCONS_00043366 ID=TCONS_00043366|Name=TCONS_00043366|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at sc0004160:6905..7654 (Clytia hemisphaerica)
AACAGATGCTTATGCGAGATGGTGGACGAAGCGATggcccaaatattgac
aacgtCCGATCCGCCCGCAGAAGAAAATGCCGCCACAACGTCTGAGGTGG
AGAAAGAAAAAGACGCGACGCCATCTTCAACCGAGGACAAAAAACGTTCT
TTATCGCCGTTCATCTACAACACTTTTTCTATGCTCTCCTATATTGTTTG
CCAACCAGGGGGTAAGGCTGCTTTCCTCAACGCTGTGACGTCATCATCGG
GAATAATGGTAGCTGAGTTCCCTGCTTTTATTCCCAATGCGATTGCTCTC
CAAGCTAAAGAGCCCGACTGGTTTTACCTTGAGAATTGCCTTCTCCCGAT
CCTACATTCGATCTGTGATCATCAGGTGTGTCTAACTCaaaccaatgacg
tcatcacttccCAACACTTAGCCAATCATCTTCCCCAAGGGGATTTCATG
GAAGCCATTGTGGAATTCTGTTTCCAATTGACTGCCAACCACGCTTTACC
GGTACCGTTATTGATGCGATGTTTGGATATGCTTGAATCGCTAACGGAAC
ACGACTACGGGATGCAGTACATACGGAAATNGTGTTTGGATATGCTTGAA
TCGCTAACGGAACATGACTACGGGATGCAGTATATACGGAAATCCTTGGA
TGTGAAAGGTACGAATGAGACTGCAAATTGTatgaaaactatataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027071XLOC_027071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043366-exon-sc0004160-1491911889:6905..7654TCONS_00043366-exon-sc0004160-1491911889:6905..7654Clytia hemisphaericaexon
TCONS_00043366-exon-sc0004160-1510915933:6905..7654TCONS_00043366-exon-sc0004160-1510915933:6905..7654Clytia hemisphaericaexon
TCONS_00043366-exon-sc0004160-1575043694:6905..7654TCONS_00043366-exon-sc0004160-1575043694:6905..7654Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043366-proteinTCONS_00043366-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004160supercontigsc0004160:6905..7654 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.56869	5.221	4.06127	4.2018	17.7305	12.806	15.0992	16.4172	10.5469	14.576	12.7811	7.78203	7.20388	11.2504	6.25185	8.14293	8.61622	7.89582	5.57775	3.73103	7.70457	5.61442	8.00526	7.03779	16.1382	13.2952	9.72461	10.8279	9.71343	11.0058
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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