TCONS_00043370 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043370
Unique NameTCONS_00043370
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043370 ID=TCONS_00043370|Name=TCONS_00043370|organism=Clytia hemisphaerica|type=transcript|length=464bp
CCATAGTCAACGGTCAATGGTCAAGTTGGTCTAGAATGACACCATGTACA
AAGACTTGTGGCTTTGGGAGTACACAGAGAACAAGAACTTGTACCGCCCC
TGCACCCAGGCATGGAGGGCGGGATTGTGTTGGAACGCCAATTGAGATTA
TTGAAGGGTGTAATCCGTATCCTTGCCCAGTGAATGGAGGCTTCGGTGAT
TGGATTCAATCTGATTACTGTACACAACCATGTGGTCTCGGTGGTGTAAT
ACCTTTTCGAAGATTTTGCGATAATCCAAAACCGAAATACCGTGGTGGAG
GTTGCCAGGGTTCAAATTATAGAACTATTCCTTGTAATGAACATATCAGA
TGTAATGAGTCTATCAGCGTGACGTTTATTAGTAAATTGTTGGATTTGGA
TTGGTATTATACAATGGTTTACAAAGATCACCATCATTTTATTGATGTCA
GAGATCAGTTAACT
Run BLAST on NCBI

protein sequence of TCONS_00043370-protein

>TCONS_00043370-protein ID=TCONS_00043370-protein|Name=TCONS_00043370-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
IVNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEII
EGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGG
CQGSNYRTIPCNEHIRCNESISVTFISKLLDLDWYYTMVYKDHHHFIDVR
DQLT
Run BLAST on NCBI

transcript from alignment at sc0004165:6321..7644+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043370 ID=TCONS_00043370|Name=TCONS_00043370|organism=Clytia hemisphaerica|type=transcript|length=1324bp|location=Sequence derived from alignment at sc0004165:6321..7644+ (Clytia hemisphaerica)
CCATAGTCAACGGTCAATGGTCAAGTTGGTCTAGAATGACACCATGTACA
AAGACTTGTGGCTTTGGGAGTACACAGAGAACAAGAACTTGTACCGCCCC
TGCACCCAGGCATGGAGGGCGGGATTGTGTTGGAACGCCAATTGAGATTA
TTGAAGGGTGTAATCCGTATCCTTGCCCAGGTGCGTGTTGTATTTAATTC
ATTCGTAAGGACATATCTTGAATTGAAAGCTATTAAAAAATCCCTCGGTA
TAGTTTTTTATGTATAAAAAGATTATCAGCATTAGACTATTtcaccacgt
cgttgtatttcgctacAACTTACGCTTGCAATGGGCTCACTACGTTCGCT
GAATACAAACCCACAGATTTCTGTGAAGCCCGAAGGGTTATTAAGctctt
tcaagcaaaaaaaaataagtattacaaaaattattgctgctattgttttc
gaaaacctgcatTGAAGCTTCTTATTAGTCAAGTGCTGAAATACTATTGT
AATGTCATGGATTTTCtccctaacctcggcacacttttcagccaaaaaac
aacatctagcccttcgggcttcatAAATCTATGATTTGATCATGACTTTT
CAGATAACTTGGACTTACTATATTCTACTGCACTCTTGCATTCTTTAGTG
AATGGAGGCTTCGGTGATTGGATTCAATCTGATTACTGTACACAACCATG
TGGTCTCGGTGGTGTAATACCTTTTCGAAGATTTTGCGATAATCCAAAAC
CGAAATACCGTGGTGGAGGTTGCCAGGGTTCAAATTATAGAACTATTCCT
TGTAATGAACATATCAGATGTAATGAGTGTAAGTTcatattcaatttctt
ttccaACAGTTACAGCTATTTTTTCTCGTATATATATTTGAACCATACAC
AGCAATCTGTTATCGGATGCAAAATGttcataaaaagttttgtttattaA
TATAAACTTTTCGTTTTATCCTTGATGTACTAATAATAAGTTTCTCAAGT
AAAAATTTTTAGCCTAGAGCAGGAATTATAGTGATTCCGATTTTAGGGAT
CTAGGAAGGGATTTCTGGGGAAAGAGGGATCCCAAGATAACTCTAGTTAA
GAAGAactaaaaaagattttaggaaaaatagatttttgtctattttcttc
GTTAACAACTCGAACTATGAGACAAATAACAAATATCTGATGACACGTTT
TAAACTTTGTTCATTTTTAGCTATCAGCGTGACGTTTATTAGTAAATTGT
TGGATTTGGATTGGTATTATACAATGGTTTACAAAGATCACCATCATTTT
ATTGATGTCAGAGATCAGTTAACT

Coding sequence (CDS) from alignment at sc0004165:6321..7644+

>TCONS_00043370 ID=TCONS_00043370|Name=TCONS_00043370|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at sc0004165:6321..7644+ (Clytia hemisphaerica)
ATAGTCAACGGTCAATGGTCAAGTTGGTCTAGAATGACACCATGTACAAA
GACTTGTGGCTTTGGGAGTACACAGAGAACAAGAACTTGTACCGCCCCTG
CACCCAGGCATGGAGGGCGGGATTGTGTTGGAACGCCAATTGAGATTATT
GAAGGGTGTAATCCGTATCCTTGCCCAGTGAATGGAGGCTTCGGTGATTG
GATTCAATCTGATTACTGTACACAACCATGTGGTCTCGGTGGTGTAATAC
CTTTTCGAAGATTTTGCGATAATCCAAAACCGAAATACCGTGGTGGAGGT
TGCCAGGGTTCAAATTATAGAACTATTCCTTGTAATGAACATATCAGATG
TAATGAGTCTATCAGCGTGACGTTTATTAGTAAATTGTTGGATTTGGATT
GGTATTATACAATGGTTTACAAAGATCACCATCATTTTATTGATGTCAGA
GATCAGTTAACTATAGTCAACGGTCAATGGTCAAGTTGGTCTAGAATGAC
ACCATGTACAAAGACTTGTGGCTTTGGGAGTACACAGAGAACAAGAACTT
GTACCGCCCCTGCACCCAGGCATGGAGGGCGGGATTGTGTTGGAACGCCA
ATTGAGATTATTGAAGGGTGTAATCCGTATCCTTGCCCAGTGAATGGAGG
CTTCGGTGATTGGATTCAATCTGATTACTGTACACAACCATGTGGTCTCG
GTGGTGTAATACCTTTTCGAAGATTTTGCGATAATCCAAAACCGAAATAC
CGTGGTGGAGGTTGCCAGGGTTCAAATTATAGAACTATTCCTTGTAATGA
ACATATCAGATGTAATGAGTCTATCAGCGTGACGTTTATTAGTAAATTGT
TGGATTTGGATTGGTATTATACAATGGTTTACAAAGATCACCATCATTTT
ATTGATGTCAGAGATCAGTTAACTATAGTCAACGGTCAATGGTCAAGTTG
GTCTAGAATGACACCATGTACAAAGACTTGTGGCTTTGGGAGTACACAGA
GAACAAGAACTTGTACCGCCCCTGCACCCAGGCATGGAGGGCGGGATTGT
GTTGGAACGCCAATTGAGATTATTGAAGGGTGTAATCCGTATCCTTGCCC
AGTGAATGGAGGCTTCGGTGATTGGATTCAATCTGATTACTGTACACAAC
CATGTGGTCTCGGTGGTGTAATACCTTTTCGAAGATTTTGCGATAATCCA
AAACCGAAATACCGTGGTGGAGGTTGCCAGGGTTCAAATTATAGAACTAT
TCCTTGTAATGAACATATCAGATGTAATGAGTCTATCAGCGTGACGTTTA
TTAGTAAATTGTTGGATTTGGATTGGTATTATACAATGGTTTACAAAGAT
CACCATCATTTTATTGATGTCAGAGATCAGTTAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027075XLOC_027075Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043370-proteinTCONS_00043370-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043370-exon-sc0004165-1491911889:6321..6500TCONS_00043370-exon-sc0004165-1491911889:6321..6500Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1510915933:6321..6500TCONS_00043370-exon-sc0004165-1510915933:6321..6500Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1575043694:6321..6500TCONS_00043370-exon-sc0004165-1575043694:6321..6500Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1491911889:6969..7148TCONS_00043370-exon-sc0004165-1491911889:6969..7148Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1510915933:6969..7148TCONS_00043370-exon-sc0004165-1510915933:6969..7148Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1575043694:6969..7148TCONS_00043370-exon-sc0004165-1575043694:6969..7148Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1491911889:7541..7644TCONS_00043370-exon-sc0004165-1491911889:7541..7644Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1510915933:7541..7644TCONS_00043370-exon-sc0004165-1510915933:7541..7644Clytia hemisphaericaexon
TCONS_00043370-exon-sc0004165-1575043694:7541..7644TCONS_00043370-exon-sc0004165-1575043694:7541..7644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004165supercontigsc0004165:6321..7644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.407016	0.315057	0	0.187622	0	0.178872	0.502372	0.117241	0	0	0.277976	2.96096	1.92186	0.158003	0.678247	0.208886	0	5.47217	5.26195	0.538069	0.984192	0.638088	0.290057	1.34438	1.19983	0.190773	0	0.617687	0.786656
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
Blast
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BLAST of TCONS_00043370 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.790e-22
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 3 
Query:    6 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCNE 341
            V+G WS WS    CT++CG G+  RTRTC  P+ +HGGR C G  +EII  CN  PCPV+G +  W     C++ CG  G     R C+NP P + G  C G+  +   CNE
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIM-CNIRPCPVHGAWSAWQPWGTCSESCG-KGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNE 4694

HSP 2 Score: 80.4925 bits (197), Expect = 1.630e-17
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 3 
Query:    6 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 338
            ++G+W++W+  + C+ +CG G+ QRTR C+ P P++GGR C G+ ++  + CN  PCP +G +  W     C++ C  GG +   R CDNP P   G  C G + +   CN
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQ-SDFCNSDPCPTHGNWSPWSGWGTCSRTCN-GGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCN 4807

HSP 3 Score: 79.337 bits (194), Expect = 4.445e-17
Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 3 
Query:    6 VNGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 338
            V+G +S WS    C+ TCG G  +R+R C  P P +GG+ C G+ +E +  C   PCPV+G + +W   + CT+ CG G      R C+NP  ++ G  C+G+    I CN
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLE-MRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQT-RTRTCNNPSVQHGGRPCEGNAVEIIMCN 4636

HSP 4 Score: 77.7962 bits (190), Expect = 1.327e-16
Identity = 45/110 (40.91%), Postives = 57/110 (51.82%), Query Frame = 3 
Query:    9 NGQWSSWSRMTPCTKTCGFGSTQRTRTCTAPAPRHGGRDCVGTPIEIIEGCNPYPCPVNGGFGDWIQSDYCTQPCGLGGVIPFRRFCDNPKPKYRGGGCQGSNYRTIPCN 338
            +G WS WS    C++TC  G  +R RTC  P P +GGR C G P   I+ CN   CPV+G +G W     C+  CG GG    +R CD+P P   G  C G   +   CN
Sbjct: 4757 HGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRAC-GGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCG-GGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCN 4864
The following BLAST results are available for this feature:
BLAST of TCONS_00043370 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN12.790e-2243.75Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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