TCONS_00043377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043377
Unique NameTCONS_00043377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043377 ID=TCONS_00043377|Name=TCONS_00043377|organism=Clytia hemisphaerica|type=transcript|length=1768bp
AAATTCTATTCATTCTTAGATTTAACATGTCAGATAATCTAAAAACTTTA
CTGGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCCTTCAATGAGCAAAA
TGTCAAATTTGAAACTATCTCACACCTTAGTGACATGGATTTGGTAAGGT
TGGGAATTTCAACTGTTGGCGACAGGATAAATTTCAAACGAGTGTATAGA
TCAATGGCAACACAACCCACCAATGTAAGAAATCTTGTAGCTGATAGAGT
ACTGACAGAACGTTCGGTCGCCTTTCAACCATACAGTAGTgagaggaaaa
gaagaaaaaccggagataaaaataaaagtgttgCACAACCGTGGACAGCA
AACTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAAGTTCCGAAtgcaaa
tgaaaaagttttgctTTTTAAAGCGAATCTTGGGTTAAAAAAGATCAAGC
TTGACCTTGGAAATTCAGAAGAAGTTGTTAAAGATGTTCTAATTGAGAAT
TTCCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTGCTGAGGTGTATGGC
CAACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCTGGCAGCAAAAGATA
TTAAAGCATGCATTGGAGGTGGTCAAGCTAAAATCTACATACGGCCAATC
CAACATGACTTATCATTGCTGGCCGATGAAAACTCACAAACAACTAGTTC
GTCATcatcaataaaagaaaaatgtaaGGTGTGTCAAACTTTGTTTTCTA
TCAGCACACTCCGTGAACATTTGAAGCAGTGTGCCTATGAAaacattgat
gatgatgaagatgatACATTGTTTGAATACAGCTACAGAGAACTAGGATC
AATACGACCAAACTCACCAACACCACCTAACTCACCAACACCACCCAGGA
CAAGAGAGCAACAGTCACCACCCAACAGTACAACAGAGCAAGACCTGACC
CCCAGGACAAGCGACCCCTTCTCAGCTACTGTGACATCAGAGAGAGAATT
GCCAAACAGGACAACTGGAGAAAATTCATCAACCAGGGCCGTAGAGCAAG
ATCCACAACATGAGACAGCCCCATCTGACCAGGCTTTCAATATTGAAATT
ATAGATGGGCCTCGTATCAAAATTTGTGACCCTCCTAGAGAGATTGTAAT
AGATACAGAGATAGTGTCAATCCTAGCTGACATTCACAGTAATGAAACAA
TAAAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTCAAAAGAGGTTGATT
CAGGGGAGAGACTTGGAAATCATGGACCCTGCTGTTGTATGCCAAGGAGC
TACAAACTTCATCATGGTAGACAGAACAGATATCTTGACCACTGCCTTTG
ATGAAATATCAACCACCATAAAGCCAACCAACCGATTTGTTTGTTTAGAG
GTTGAATTTTATGGTGAGCTCGCCGAAGATCTAGGGGGACCAAGAAGAGA
ATTCTTTACCCTGGCTTTGAGGCAAATACAAAAAGAGTATTTTGAATCAG
AGAATGATTTGCGTGAATCACCCCATTATTACAACATCGGTGTTGTGTTT
GCTTTGAGTATTCTACAAAACGGTGGATTCCCCATGTTTTTCGGCGAAAA
TGGTCTTAACGAAATTTTCTCTTCGGAAAGCCCAAAATCAGGATACCAAG
AAATACGGACTGcattcaaagattttggtttgTTTCAGGTAActgttcaa
ttttgttttgttccgtAATTGTTCTGAAATTTGTCACAGAGGCTCTTTTA
GGTATACTGAGTTACGAT
Run BLAST on NCBI

protein sequence of TCONS_00043377-protein

>TCONS_00043377-protein ID=TCONS_00043377-protein|Name=TCONS_00043377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=571bp
ILFILRFNMSDNLKTLLERAGLSHLAESFNEQNVKFETISHLSDMDLVRL
GISTVGDRINFKRVYRSMATQPTNVRNLVADRVLTERSVAFQPYSSERKR
RKTGDKNKSVAQPWTANFMCLALRFSKKVPNANEKVLLFKANLGLKKIKL
DLGNSEEVVKDVLIENFPKLKEAGGFELLRCMANCRVLDVLSCTLAAKDI
KACIGGGQAKIYIRPIQHDLSLLADENSQTTSSSSSIKEKCKVCQTLFSI
STLREHLKQCAYENIDDDEDDTLFEYSYRELGSIRPNSPTPPNSPTPPRT
REQQSPPNSTTEQDLTPRTSDPFSATVTSERELPNRTTGENSSTRAVEQD
PQHETAPSDQAFNIEIIDGPRIKICDPPREIVIDTEIVSILADIHSNETI
KGNPVEVLRFIQKRLIQGRDLEIMDPAVVCQGATNFIMVDRTDILTTAFD
EISTTIKPTNRFVCLEVEFYGELAEDLGGPRREFFTLALRQIQKEYFESE
NDLRESPHYYNIGVVFALSILQNGGFPMFFGENGLNEIFSSESPKSGYQE
IRTAFKDFGLFQVTVQFCFVP
Run BLAST on NCBI

transcript from alignment at sc0004175:89..3520-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043377 ID=TCONS_00043377|Name=TCONS_00043377|organism=Clytia hemisphaerica|type=transcript|length=3432bp|location=Sequence derived from alignment at sc0004175:89..3520- (Clytia hemisphaerica)
AAATTCTATTCATTCTTAGATTTAACATGTCAGATAATCTAAAAACTTTA
CTGGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCCTTCAATGAGCAAAA
TGTCAAATTTGAAACTATCTCACACCTTAGTGACATGGATTTGGTAAGGT
TGGGAATTTCAACTGTTGGCGACAGGATAAATTTCAAACGAGTGTATAGA
TCAATGGCAACACAACCCACCAATGTAAGAAATCTTGTAGCTGATAGAGT
ACTGACAGAACGTTCGGTCGCCTTTCAACCATACAGTAGTGAGAGGAAAA
GAAGAAAAACCGGAGATAAAAATAAAAGTGTTGCACAACCGTGGACAGCA
AACTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAAGTTCCGAATGCAAA
TGAAAAAGTTTTGCTTTTTAAAGCGAATCTTGGGTTAAAAAAGATCAAGC
TTGACCTTGGAAATTCAGAAGAAGTTGTTAAAGATGTTCTAATTGAGAAT
TTCCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTGCTGAGGTGTATGGC
CAACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCTGGCAGCAAAAGATA
TTAAAGCATGCATTGGAGGTGGTCAAGCTAAAATCTACATACGGCCAATC
CAACATGACTTATCATTGCTGGCCGATGAAAACTCACAAACAACTAGTTC
GTCATCATCAATAAAAGAAAAATGTAAGGTGTGTCAAACTTTGTTTTCTA
TCAGCACACTCCGTGAACATTTGAAGCAGTGTGCCTATGAAAACATTGAT
GATGATGAAGATGATACATTGTTTGAATACAGCTACAGAGAACTAGGATC
AATACGACCAAACTCACCAACACCACCTAACTCACCAACACCACCCAGGA
CAAGAGAGCAACAGTCACCACCCAACAGTACAACAGAGCAAGACCTGACC
CCCAGGACAAGCGACCCCTTCTCAGCTACTGTGACATCAGAGAGAGAATT
GCCAAACAGGACAACTGGAGAAAATTCATCAACCAGGGCCGTAGAGCAAG
ATCCACAACATGAGACAGCCCCATCTGACCAGGCTTTCAATATTGAAATT
ATAGATGGGCCTCGTATCAAAATTTGTGACCCTCCTAGAGAGATTGTAAT
AGATACAGAGATAGTGTCAATCCTAGCTGACATTCACAGTAATGAAACAA
TAAAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTCAAAAGAGGTTGATT
CAGGGGAGAGACTTGGAAATCATGGACCCTGCTGTTGTATGCCAAGGAGC
TACAAACTTCATCATGGTAGACAGAACAGATATCTTGACCACTGCCTTTG
ATGAAATATCAACCACCATAAAGCCAACCAACCGATTTGTTTGTTTAGAG
GTTGAATTTTATGGTGAGGTATGTAAAACATTTTTTTTTATCTTTAAGTT
ACGTCAAGAGCAATTGTCTAATAAATATATTACCTTAAGGGAAGAAATTT
TCGCGGGAATTTAATTTCGCGGTTGGTTAAATAATTTTTTTTCGCGGAAA
TTTAATTTCGCGGTTCATCGATTTTCGAAAAATTCGCGGGAATTTAATTT
CGCGGTTGCAGGATATCTTTGACCAAAAACGTTATTAAATAAGCAAAAAA
CCTGTTTTAAGGCTTGAAATTGTACGAATTTGGGGGAATGCGTGAAATAA
ATTAAATTTCGCGGGAATTAAATTTCGCGGTTTGACGATCTTGTAAAATT
TCGCGGGAACTTAATTTCGCGGTTTTAGGCAAAATCCGCGAAAACCGCGA
AATTTTGTTCCCGCGAAAATTTCTTCCCTTAAGGTATATATATAAGTATC
TGAAATATTGCAATAATAATGGAAAGTAAGAAAATTACTTAAATACTAGT
CTTTCAAATTTTTTTAATGTACTGCCCTTGATTTTCCTTGATCATTGAGC
ACCTTTAAGCTAAGGCTACACTAGACACTTTTTCGTGCGCTTGCAACGCA
ACATCTGCTGCATTGCAAGCGCACGAAAAAAGTCGAGTTTAGCCTGTTGA
AATTTTCTGCAATTTTCACTGCAACACAACAAAAAACTTCAAAAAAATGT
TGCAAGGCTATGCAACAAAATAGATCAGATCTATTTTGTTTCAGGGCTTC
TGCGACAAATATCAATGGATTTTCTTCTTTCTGTTTACTTTTCTGCTTCC
GTTCTTTTGTTAAACCACTCGAAGTGAATTTTTTCTAAAAAATCTCTCTT
GATTTATTGAAAATTGATTCGAATTTTTTTTTACCCCTGGCTAGACCACC
AATATTTCCAGGCGCTTGCAAGTTTGCTAATTGAAGTCTGCATGTAATTT
TTAGTTTTTTCAGGTTTCTAGGACCTTAACCCTTAAAATGGTAAATCGAT
AATAAATAATCAACCAATAAAATATTAACTTTCACTCTACCGTTTTAGCT
CGCCGAAGATCTAGGGGGACCAAGAAGAGAATTCTTTACCCTGGCTTTGA
GGCAAATACAAAAAGAGTATTTTGAATCAGAGAATGATTTGCGTGAATCA
CCCCATTATTACAACATCGGTGTTGTGTTTGGTAAGTTCCCTCAACCTAT
ATCCCACAGTTTTTTAATTATTATATACTTACCAAATTTTTACTATGCTA
TAGATGGCGACGAAAATCATTTCATTTAAATTTAATGCACAAAGGTTCCA
TTTATATTAGGGGTGATTTTTGGAAGTTTGTGGTTTTCTTTACAGAGAAG
TTTTGTTTGGGATTGAACGTCCCCGTCCATCGTCCCCATAGCCGATTTTG
CAAAAGTATAAACCCCGAGAATGTCATTTTTCATCTAATTATACCTTATT
CTTTTACCTTGTAGGTACTAATTTTCGCGCGTATTAATTTTGGCGCACAA
AGGCTTCCTATATATTTTTTTCTAAACATATAAATAAAAATAAAGACATT
TTTAAAGATAATAATGCCACTTTCTTTCCAAAAATAAAAACAAAAAGAAT
ACGGTTTTAAAATGGTATTAATTTTCGCGCACTGACTGCGCATAATTTCG
GTATTCAATTTTGCACATTTTTGGGCCTCTGTGCGAAAACTAGTACGCGC
GAAAATTAGTACCTTTAAGGGGATATTTTTAATGAATTTACATACGGTTG
AGAAATCTTTATTACCTCGTTAACTTGATAGTTGTTTATAAACTTGTTTT
TGTATTACCTTTCAGCTTTGAGTATTCTACAAAACGGTGGATTCCCCATG
TTTTTCGGCGAAAATGGTCTTAACGAAATTTTCTCTTCGGAAAGCCCAAA
ATCAGGATACCAAGAAATACGGACTGCATTCAAAGATTTTGGTTTGTTTC
AGGTAACTGTTCAATTTTGTTTTGTTCCGTAATTGTTCTGAAATTTGTCA
CAGAGGCTCTTTTAGGTATACTGAGTTACGAT

Coding sequence (CDS) from alignment at sc0004175:89..3520-

>TCONS_00043377 ID=TCONS_00043377|Name=TCONS_00043377|organism=Clytia hemisphaerica|type=CDS|length=5148bp|location=Sequence derived from alignment at sc0004175:89..3520- (Clytia hemisphaerica)
CTTTGAGTATTCTACAAAACGGTGGATTCCCCATGTTTTTCGGCGAAAAT
GGTCTTAACGAAATTTTCTCTTCGGAAAGCCCAAAATCAGGATACCAAGA
AATACGGACTGCATTCAAAGATTTTGGTTTGTTTCAGGTAACTGTTCAAT
TTTGTTTTGTTCCGTAACTCGCCGAAGATCTAGGGGGACCAAGAAGAGAA
TTCTTTACCCTGGCTTTGAGGCAAATACAAAAAGAGTATTTTGAATCAGA
GAATGATTTGCGTGAATCACCCCATTATTACAACATCGGTGTTGTGTTTG
ATTCTATTCATTCTTAGATTTAACATGTCAGATAATCTAAAAACTTTACT
GGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCCTTCAATGAGCAAAATG
TCAAATTTGAAACTATCTCACACCTTAGTGACATGGATTTGGTAAGGTTG
GGAATTTCAACTGTTGGCGACAGGATAAATTTCAAACGAGTGTATAGATC
AATGGCAACACAACCCACCAATGTAAGAAATCTTGTAGCTGATAGAGTAC
TGACAGAACGTTCGGTCGCCTTTCAACCATACAGTAGTGAGAGGAAAAGA
AGAAAAACCGGAGATAAAAATAAAAGTGTTGCACAACCGTGGACAGCAAA
CTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAAGTTCCGAATGCAAATG
AAAAAGTTTTGCTTTTTAAAGCGAATCTTGGGTTAAAAAAGATCAAGCTT
GACCTTGGAAATTCAGAAGAAGTTGTTAAAGATGTTCTAATTGAGAATTT
CCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTGCTGAGGTGTATGGCCA
ACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCTGGCAGCAAAAGATATT
AAAGCATGCATTGGAGGTGGTCAAGCTAAAATCTACATACGGCCAATCCA
ACATGACTTATCATTGCTGGCCGATGAAAACTCACAAACAACTAGTTCGT
CATCATCAATAAAAGAAAAATGTAAGGTGTGTCAAACTTTGTTTTCTATC
AGCACACTCCGTGAACATTTGAAGCAGTGTGCCTATGAAAACATTGATGA
TGATGAAGATGATACATTGTTTGAATACAGCTACAGAGAACTAGGATCAA
TACGACCAAACTCACCAACACCACCTAACTCACCAACACCACCCAGGACA
AGAGAGCAACAGTCACCACCCAACAGTACAACAGAGCAAGACCTGACCCC
CAGGACAAGCGACCCCTTCTCAGCTACTGTGACATCAGAGAGAGAATTGC
CAAACAGGACAACTGGAGAAAATTCATCAACCAGGGCCGTAGAGCAAGAT
CCACAACATGAGACAGCCCCATCTGACCAGGCTTTCAATATTGAAATTAT
AGATGGGCCTCGTATCAAAATTTGTGACCCTCCTAGAGAGATTGTAATAG
ATACAGAGATAGTGTCAATCCTAGCTGACATTCACAGTAATGAAACAATA
AAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTCAAAAGAGGTTGATTCA
GGGGAGAGACTTGGAAATCATGGACCCTGCTGTTGTATGCCAAGGAGCTA
CAAACTTCATCATGGTAGACAGAACAGATATCTTGACCACTGCCTTTGAT
GAAATATCAACCACCATAAAGCCAACCAACCGATTTGTTTGTTTAGAGGT
TGAATTTTATGGTGAGCTTTGAGTATTCTACAAAACGGTGGATTCCCCAT
GTTTTTCGGCGAAAATGGTCTTAACGAAATTTTCTCTTCGGAAAGCCCAA
AATCAGGATACCAAGAAATACGGACTGCATTCAAAGATTTTGGTTTGTTT
CAGGTAACTGTTCAATTTTGTTTTGTTCCGTAACTCGCCGAAGATCTAGG
GGGACCAAGAAGAGAATTCTTTACCCTGGCTTTGAGGCAAATACAAAAAG
AGTATTTTGAATCAGAGAATGATTTGCGTGAATCACCCCATTATTACAAC
ATCGGTGTTGTGTTTGATTCTATTCATTCTTAGATTTAACATGTCAGATA
ATCTAAAAACTTTACTGGAGAGAGCTGGTCTCTCCCACTTAGCTGAATCC
TTCAATGAGCAAAATGTCAAATTTGAAACTATCTCACACCTTAGTGACAT
GGATTTGGTAAGGTTGGGAATTTCAACTGTTGGCGACAGGATAAATTTCA
AACGAGTGTATAGATCAATGGCAACACAACCCACCAATGTAAGAAATCTT
GTAGCTGATAGAGTACTGACAGAACGTTCGGTCGCCTTTCAACCATACAG
TAGTGAGAGGAAAAGAAGAAAAACCGGAGATAAAAATAAAAGTGTTGCAC
AACCGTGGACAGCAAACTTCATGTGTCTGGCACTTCGGTTCTCCAAAAAA
GTTCCGAATGCAAATGAAAAAGTTTTGCTTTTTAAAGCGAATCTTGGGTT
AAAAAAGATCAAGCTTGACCTTGGAAATTCAGAAGAAGTTGTTAAAGATG
TTCTAATTGAGAATTTCCCCAAATTAAAAGAAGCTGGAGGTTTTGAGTTG
CTGAGGTGTATGGCCAACTGTCGAGTCTTGGATGTTCTGTCTTGTACGCT
GGCAGCAAAAGATATTAAAGCATGCATTGGAGGTGGTCAAGCTAAAATCT
ACATACGGCCAATCCAACATGACTTATCATTGCTGGCCGATGAAAACTCA
CAAACAACTAGTTCGTCATCATCAATAAAAGAAAAATGTAAGGTGTGTCA
AACTTTGTTTTCTATCAGCACACTCCGTGAACATTTGAAGCAGTGTGCCT
ATGAAAACATTGATGATGATGAAGATGATACATTGTTTGAATACAGCTAC
AGAGAACTAGGATCAATACGACCAAACTCACCAACACCACCTAACTCACC
AACACCACCCAGGACAAGAGAGCAACAGTCACCACCCAACAGTACAACAG
AGCAAGACCTGACCCCCAGGACAAGCGACCCCTTCTCAGCTACTGTGACA
TCAGAGAGAGAATTGCCAAACAGGACAACTGGAGAAAATTCATCAACCAG
GGCCGTAGAGCAAGATCCACAACATGAGACAGCCCCATCTGACCAGGCTT
TCAATATTGAAATTATAGATGGGCCTCGTATCAAAATTTGTGACCCTCCT
AGAGAGATTGTAATAGATACAGAGATAGTGTCAATCCTAGCTGACATTCA
CAGTAATGAAACAATAAAAGGTAACCCTGTTGAAGTGTTGCGGTTCATTC
AAAAGAGGTTGATTCAGGGGAGAGACTTGGAAATCATGGACCCTGCTGTT
GTATGCCAAGGAGCTACAAACTTCATCATGGTAGACAGAACAGATATCTT
GACCACTGCCTTTGATGAAATATCAACCACCATAAAGCCAACCAACCGAT
TTGTTTGTTTAGAGGTTGAATTTTATGGTGAGCTTTGAGTATTCTACAAA
ACGGTGGATTCCCCATGTTTTTCGGCGAAAATGGTCTTAACGAAATTTTC
TCTTCGGAAAGCCCAAAATCAGGATACCAAGAAATACGGACTGCATTCAA
AGATTTTGGTTTGTTTCAGGTAACTGTTCAATTTTGTTTTGTTCCGTAAC
TCGCCGAAGATCTAGGGGGACCAAGAAGAGAATTCTTTACCCTGGCTTTG
AGGCAAATACAAAAAGAGTATTTTGAATCAGAGAATGATTTGCGTGAATC
ACCCCATTATTACAACATCGGTGTTGTGTTTGATTCTATTCATTCTTAGA
TTTAACATGTCAGATAATCTAAAAACTTTACTGGAGAGAGCTGGTCTCTC
CCACTTAGCTGAATCCTTCAATGAGCAAAATGTCAAATTTGAAACTATCT
CACACCTTAGTGACATGGATTTGGTAAGGTTGGGAATTTCAACTGTTGGC
GACAGGATAAATTTCAAACGAGTGTATAGATCAATGGCAACACAACCCAC
CAATGTAAGAAATCTTGTAGCTGATAGAGTACTGACAGAACGTTCGGTCG
CCTTTCAACCATACAGTAGTGAGAGGAAAAGAAGAAAAACCGGAGATAAA
AATAAAAGTGTTGCACAACCGTGGACAGCAAACTTCATGTGTCTGGCACT
TCGGTTCTCCAAAAAAGTTCCGAATGCAAATGAAAAAGTTTTGCTTTTTA
AAGCGAATCTTGGGTTAAAAAAGATCAAGCTTGACCTTGGAAATTCAGAA
GAAGTTGTTAAAGATGTTCTAATTGAGAATTTCCCCAAATTAAAAGAAGC
TGGAGGTTTTGAGTTGCTGAGGTGTATGGCCAACTGTCGAGTCTTGGATG
TTCTGTCTTGTACGCTGGCAGCAAAAGATATTAAAGCATGCATTGGAGGT
GGTCAAGCTAAAATCTACATACGGCCAATCCAACATGACTTATCATTGCT
GGCCGATGAAAACTCACAAACAACTAGTTCGTCATCATCAATAAAAGAAA
AATGTAAGGTGTGTCAAACTTTGTTTTCTATCAGCACACTCCGTGAACAT
TTGAAGCAGTGTGCCTATGAAAACATTGATGATGATGAAGATGATACATT
GTTTGAATACAGCTACAGAGAACTAGGATCAATACGACCAAACTCACCAA
CACCACCTAACTCACCAACACCACCCAGGACAAGAGAGCAACAGTCACCA
CCCAACAGTACAACAGAGCAAGACCTGACCCCCAGGACAAGCGACCCCTT
CTCAGCTACTGTGACATCAGAGAGAGAATTGCCAAACAGGACAACTGGAG
AAAATTCATCAACCAGGGCCGTAGAGCAAGATCCACAACATGAGACAGCC
CCATCTGACCAGGCTTTCAATATTGAAATTATAGATGGGCCTCGTATCAA
AATTTGTGACCCTCCTAGAGAGATTGTAATAGATACAGAGATAGTGTCAA
TCCTAGCTGACATTCACAGTAATGAAACAATAAAAGGTAACCCTGTTGAA
GTGTTGCGGTTCATTCAAAAGAGGTTGATTCAGGGGAGAGACTTGGAAAT
CATGGACCCTGCTGTTGTATGCCAAGGAGCTACAAACTTCATCATGGTAG
ACAGAACAGATATCTTGACCACTGCCTTTGATGAAATATCAACCACCATA
AAGCCAACCAACCGATTTGTTTGTTTAGAGGTTGAATTTTATGGTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027082XLOC_027082Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043377-proteinTCONS_00043377-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043377-exon-sc0004175-1575043694:2103..3520TCONS_00043377-exon-sc0004175-1575043694:2103..3520Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1575043694:940..1072TCONS_00043377-exon-sc0004175-1575043694:940..1072Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1575043694:89..305TCONS_00043377-exon-sc0004175-1575043694:89..305Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1510915933:2103..3520TCONS_00043377-exon-sc0004175-1510915933:2103..3520Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1510915933:940..1072TCONS_00043377-exon-sc0004175-1510915933:940..1072Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1510915933:89..305TCONS_00043377-exon-sc0004175-1510915933:89..305Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1491911889:2103..3520TCONS_00043377-exon-sc0004175-1491911889:2103..3520Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1491911889:940..1072TCONS_00043377-exon-sc0004175-1491911889:940..1072Clytia hemisphaericaexon
TCONS_00043377-exon-sc0004175-1491911889:89..305TCONS_00043377-exon-sc0004175-1491911889:89..305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004175supercontigsc0004175:89..3520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0682702	0	0.0257663	0.0252083	0	0	0.0292574	0.0273904	0.153413	0.0950136	0.0691669	0.0606234	0.0151348	0.125741	0.0387661	0.0693366	0	0	0.0241909	0.025314	0	0	0.0521848	0.0237218	0	0.0654173	0.062408	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001660SAM
IPR000569HECT_dom
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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