TCONS_00043383 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043383
Unique NameTCONS_00043383
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length417

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043383 ID=TCONS_00043383|Name=TCONS_00043383|organism=Clytia hemisphaerica|type=transcript|length=417bp
aaaaaatcgtcaTCCTCTATGGAAACTTCACTTGTATGTATAAGACGAGT
AATGAATCTAGTAATTCAGACTGGATCTCTGTACTATTATCGTAAAATCT
ATATCCACTAAAAACAGACCTTTGTTCTATTGGTTTTTATGTTCTTTTAT
GTCCCTTTCCTAGCGGGCTAATAAACGACTCGGACTTTTTGAGACAGAGA
CGTTCCCCTCGCACAAATGAAACATGTATAACAACGCTtccatttttttt
ctcagaataTTGCTTGACTTAAAGACGAAAGGCCCAAAGAACCGTCCGTG
ACAGACAAATATTATCGTCAAGCTGTGAAGTAAAAATTGATGATAGTGTT
ACCTAATTGTAATTTATCGAAAGTGTACGTAAGGTATAAAAGCTAAAAGA
ATAAAAGTATATCTggc
Run BLAST on NCBI

transcript from alignment at sc0004178:4798..5214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043383 ID=TCONS_00043383|Name=TCONS_00043383|organism=Clytia hemisphaerica|type=transcript|length=417bp|location=Sequence derived from alignment at sc0004178:4798..5214 (Clytia hemisphaerica)
gccAGATATACTTTTATTCTTTTAGCTTTTATACCTTACGTACACTTTCG
ATAAATTACAATTAGGTAACACTATCATCAATTTTTACTTCACAGCTTGA
CGATAATATTTGTCTGTCACGGACGGTTCTTTGGGCCTTTCGTCTTTAAG
TCAAGCAAtattctgagaaaaaaaatggaAGCGTTGTTATACATGTTTCA
TTTGTGCGAGGGGAACGTCTCTGTCTCAAAAAGTCCGAGTCGTTTATTAG
CCCGCTAGGAAAGGGACATAAAAGAACATAAAAACCAATAGAACAAAGGT
CTGTTTTTAGTGGATATAGATTTTACGATAATAGTACAGAGATCCAGTCT
GAATTACTAGATTCATTACTCGTCTTATACATACAAGTGAAGTTTCCATA
GAGGAtgacgatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027088XLOC_027088Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043383-exon-sc0004178-1491911889:4798..5214TCONS_00043383-exon-sc0004178-1491911889:4798..5214Clytia hemisphaericaexon
TCONS_00043383-exon-sc0004178-1510915933:4798..5214TCONS_00043383-exon-sc0004178-1510915933:4798..5214Clytia hemisphaericaexon
TCONS_00043383-exon-sc0004178-1575043694:4798..5214TCONS_00043383-exon-sc0004178-1575043694:4798..5214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004178supercontigsc0004178:4798..5214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.217798	0.226647	0	0	0.27869	0.600332	0.791321	0	0	0	0.241334	0.488083	0.889879	0	0	0.538983	0.581003	0	0.0958569	0	0.491673	0	0	1.78143	1.28458	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043383 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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