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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043395 ID=TCONS_00043395|Name=TCONS_00043395|organism=Clytia hemisphaerica|type=transcript|length=821bp
AAATTACAAGGTGCAATATGCAATGTTCCCATTGAAACACCAGGTGTATG
TAAAGTACTTCCTAGAGGAAGTGATAGTAGTGGTGTAATAAAtattgaat
taaaaagaaaaatatcctacaaaaaCCCTGTTATTTCGCAGCAAGTAAGA
cgacagaaaatttttgaaactttggactttttagtgaataataatccttT
GTATCATGATATAAATATTGATATGTCAATAATTGACcaaatgaataatg
atgaatatGTTGAAAGGGTTTTATCAAATAATGATTCCATATCAAACGCT
TCTTCATATGATATAAGGTTTGTTGACGATACAACAGTTACTTTAATCAA
GCCTTTTGAAGAGCAATTAGAAAATGAATTTGATTCTGATGATCCACTCA
GTGCGTATCGGGCACCAACATGTGAAACAGTCATTGTATCAGAAGTGGCA
AACATTATTTTagatgatgaaaatgcaattttagctcCGGGTGAAGGTCA
AACCCCCAATTCATTAACACAAGATGAGTTCTGTGAAGAGCTAGCCCATC
CTCNNNNNNNNNNNNNNNNNNNNNNGTTTATGAGTACTATTAAAGGAACC
CCTGCATACTGGCAACATATGTTATCTGATGTTCTTGCAATGGTTAAACA
ACTTGGTGTCCCAACATACTTTATGACTCTATCTTGTGCCGATTTACGGT
GGGAGGAATTTGTTACTATTATCAGACAATTAGGCGGGGATGCTGATACT
GATCATGAACTTCTTGATTACCAATCTAGATGTGCCCTACTTAATAGCAA
TCCTGTTGTGCTTGTGCGTCA Run BLAST on NCBI protein sequence of TCONS_00043395-protein >TCONS_00043395-protein ID=TCONS_00043395-protein|Name=TCONS_00043395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
KLQGAICNVPIETPGVCKVLPRGSDSSGVINIELKRKISYKNPVISQQVR
RQKIFETLDFLVNNNPLYHDINIDMSIIDQMNNDEYVERVLSNNDSISNA
SSYDIRFVDDTTVTLIKPFEEQLENEFDSDDPLSAYRAPTCETVIVSEVA
NIILDDENAILAPGEGQTPNSLTQDEFCEELAHPXXXXXXXXFMSTIKGT
PAYWQHMLSDVLAMVKQLGVPTYFMTLSCADLRWEEFVTIIRQLGGDADT
DHELLDYQSRCALLNSNPVVLVR Run BLAST on NCBI transcript from alignment at sc0004186:4..824 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043395 ID=TCONS_00043395|Name=TCONS_00043395|organism=Clytia hemisphaerica|type=transcript|length=821bp|location=Sequence derived from alignment at sc0004186:4..824 (Clytia hemisphaerica)
TGACGCACAAGCACAACAGGATTGCTATTAAGTAGGGCACATCTAGATTG
GTAATCAAGAAGTTCATGATCAGTATCAGCATCCCCGCCTAATTGTCTGA
TAATAGTAACAAATTCCTCCCACCGTAAATCGGCACAAGATAGAGTCATA
AAGTATGTTGGGACACCAAGTTGTTTAACCATTGCAAGAACATCAGATAA
CATATGTTGCCAGTATGCAGGGGTTCCTTTAATAGTACTCATAAACNNNN
NNNNNNNNNNNNNNNNNNGAGGATGGGCTAGCTCTTCACAGAACTCATCT
TGTGTTAATGAATTGGGGGTTTGACCTTCACCCGgagctaaaattgcatt
ttcatcatctAAAATAATGTTTGCCACTTCTGATACAATGACTGTTTCAC
ATGTTGGTGCCCGATACGCACTGAGTGGATCATCAGAATCAAATTCATTT
TCTAATTGCTCTTCAAAAGGCTTGATTAAAGTAACTGTTGTATCGTCAAC
AAACCTTATATCATATGAAGAAGCGTTTGATATGGAATCATTATTTGATA
AAACCCTTTCAACatattcatcattattcatttgGTCAATTATTGACATA
TCAATATTTATATCATGATACAaaggattattattcactaaaaagtccaa
agtttcaaaaattttctgtcgTCTTACTTGCTGCGAAATAACAGGGtttt
tgtaggatatttttctttttaattcaataTTTATTACACCACTACTATCA
CTTCCTCTAGGAAGTACTTTACATACACCTGGTGTTTCAATGGGAACATT
GCATATTGCACCTTGTAATTT Coding sequence (CDS) from alignment at sc0004186:4..824 >TCONS_00043395 ID=TCONS_00043395|Name=TCONS_00043395|organism=Clytia hemisphaerica|type=CDS|length=819bp|location=Sequence derived from alignment at sc0004186:4..824 (Clytia hemisphaerica)
ACGCACAAGCACAACAGGATTGCTATTAAGTAGGGCACATCTAGATTGGT
AATCAAGAAGTTCATGATCAGTATCAGCATCCCCGCCTAATTGTCTGATA
ATAGTAACAAATTCCTCCCACCGTAAATCGGCACAAGATAGAGTCATAAA
GTATGTTGGGACACCAAGTTGTTTAACCATTGCAAGAACATCAGATAACA
TATGTTGCCAGTATGCAGGGGTTCCTTTAATAGTACTCATAAACNNNNNN
NNNNNNNNNNNNNNNNGAGGATGGGCTAGCTCTTCACAGAACTCATCTTG
TGTTAATGAATTGGGGGTTTGACCTTCACCCGgagctaaaattgcatttt
catcatctAAAATAATGTTTGCCACTTCTGATACAATGACTGTTTCACAT
GTTGGTGCCCGATACGCACTGAGTGGATCATCAGAATCAAATTCATTTTC
TAATTGCTCTTCAAAAGGCTTGATTAAAGTAACTGTTGTATCGTCAACAA
ACCTTATATCATATGAAGAAGCGTTTGATATGGAATCATTATTTGATAAA
ACCCTTTCAACatattcatcattattcatttgGTCAATTATTGACATATC
AATATTTATATCATGATACAaaggattattattcactaaaaagtccaaag
tttcaaaaattttctgtcgTCTTACTTGCTGCGAAATAACAGGGtttttg
taggatatttttctttttaattcaataTTTATTACACCACTACTATCACT
TCCTCTAGGAAGTACTTTACATACACCTGGTGTTTCAATGGGAACATTGC
ATATTGCACCTTGTAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043395-exon-sc0004186-1491911889:4..824 | TCONS_00043395-exon-sc0004186-1491911889:4..824 | Clytia hemisphaerica | exon |
| TCONS_00043395-exon-sc0004186-1510915933:4..824 | TCONS_00043395-exon-sc0004186-1510915933:4..824 | Clytia hemisphaerica | exon |
| TCONS_00043395-exon-sc0004186-1575043694:4..824 | TCONS_00043395-exon-sc0004186-1575043694:4..824 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004186 | supercontig | sc0004186:4..824 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025476 | Helitron_helicase-like |
Blast
The following BLAST results are available for this feature:
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