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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043408 ID=TCONS_00043408|Name=TCONS_00043408|organism=Clytia hemisphaerica|type=transcript|length=3876bp ATTAGAGCATTATTGTATCGTTATTACACCCCTTACCACGAGTTTTATTA CACCCCTTACCACGAGTTTTATTACATTGAAAAACCTCAACCATTCTTGT GACTTTGAGAATGTCTTAGGtcccttttctttttctttgaaacaccctaa cttctttttggacctacctccagGTACCcaggtggaggtcctttaaatta acccatgtccgtccgttcgttcgttcgttcgtccgtccgtctgttatcag cttttctcgggattggctcattacttttttctgtttttttggcacaatga tgcaaaatgatgattcctaaaaagtgacggagcccgattttcgaaaaaaa aatttatgccggaaaaactgttttttttggcattttctcgagattttatc attagttttttctgattttttgctcaaagatgcgtattaacaatgccgaa aacatggccgagtccgatttttgagaattttttttccgtccgaaaatgcc ggaaatcgttgttttttctggattttcattggactttttccttataattg gatgtttttttcattcaaaaacattattaatagcaatgcccaccatcaag catgtttcaattttcaataaaattgatttttgaagccggaactATTTAAA AATCGCCGGAACAACGTATTTTCGCCGGAAAAACAGTATTTCTTGAATTT CTCGAGCTATACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAAA ATGACAATACCTAAAATGTGACGGAGCCCAAATCAAAAAATATATATTTC CGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTCATTTTCGCATTT TCGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTACATTTTCTCG aattttcatccttagttttttctgatttttgcagaaagatgcctattcgc aatgctcaaaacatggccgagttcgatttttgagaaaaaaatttttccgg ttgaaaatgccggaaatcgccgtttttagAGATtgtcattggattttttc cttatatttctatgtttttcacacaaaaatattattgataacaatgctca ccatcaagcatgattcaattgtcaataNattttccggttgaaaatttttc cttatatttctatgtttttcacacaaaaacattattgataacaatgctca ccatcaagcatgattcaattgtcaataaaactgatttttgcgaccagaac tttctatttattttttccctacaacccttccctcttccCGCATCAACATT CAATGAtgtgatgaatttattgcgttatgcattttcgctaaacgctatat tttctgactgatttttttcatttttctcctcgcattgctatctaactttc atcatcaggtaggtccattcagcatctagcttgtttgtGTTCACCCCTCC TCCATTTCTCACTTATTTCCATTTTGTGCATGTCAGAGCTTCCattattg aatgaaaaagagGAAAGAGAAGCGGAGTTGATCATCGATATATTCGGCAT GAATGTGGCTCAGCAATTGTATTCGAAATCGTGGAAGCATCGGCAGACCT CGTTAACATCATTGGCAGATGAATTGAAACATTCGACCGAAGTAACAGAG GAACAACCACCCAAAAGTGTTTCTCGTGCTGTTCTGGCCGTCCTCAAGAA ATCCTTGAATGATCAAGTCTTCGTGGTACTAAATGAGAGCACTACTCTCC TGAAAACATTATTGCAGAATTATATCCCTGAAAAGTCgcttggaaaggct gaAGTTACTTTTGTTCTGGACAAGCTCTTGCCGATTTTAATGAAGCGACT TGGTGATTCTGCTACACGGACACGCAATTTAGCcagtgacgtcattattg atATTGCCAATTCGAAAGAGATCAAGAACTGTTCATCCATACCAAACATT GTATCTCAACCAATCAAAGCTAAGAAACAGGTACCTATTCACCTATATTC ACCTATTCACCTATATTTCCCTTGTGTTAGCCACATTTTTGCCCACTTAA CAAACTGTAAGCCACAAATCCAATGAAAAATTTAGCCCTTTGCTGGTAAT GCTGAAAAGAAAGTATATTTCTGACTGCTTCCATTATTGAGAACTCTGCC CTAAAAATTTCTTGGTAGGGTAAGCCACATGACCAGTAAGCCACATTTTT GCCCACAATTCATTTGCTTGTAACTCCCCTTTAAGTAAGCCACAAAAATT CCCCCTTAATGCAATGGATAGCTAATTTCCTCAGCTTAACCATCAAAGCA ATCCTAAGTGTAAGTCACGTAATTTTCCCAAGTTATGGTCAACAATTTAG TggctgacagtaaaaatgtcacaaaacaggggttTATTTTTGATTGGAAT CAAATGTTGTAGTGTAAAAGCTCACATCCtaaagtttgataaaaaaaata ttcagatCGCACATTGTCATGCAATGCTCTCAAAAGATACGATGAAAGGT AAATCGCTCTAGTCAGAATACTTTTTGTCAAACATTTAGCTCGAATTCTT CTGTTTGTATGGTTTGATTTGACCCTTCTTGACTTCTGAAACAACATTCT TGCCTCCTAAATCTTCGGCACGACGAactaaaatctattttattcaTGAT TTTGAAGTACAGAAAAGGGTTAATGAATGAGTTTAGACCAACAGGGATGA ATAGCCATTTTTCATTGAGGACAGTCAAATCTTGTCTTGTGAATACTATT GAAGCAAATATCGCAAACGGTAACCAACAAAGAGCAAAAGCCAAAACAAT AGCGATCGCCAGAACCATGAACTTTCTCTCTTTCTGATTTCTCACCACTT CGGATGCATTCGAAGCTGTGTTACCATCTTTGCTTTTCAGCTGTTGTTTA CTTTTCCTCATCTTCCACCAAATTATTGTATAAGCAGCGAACAAAAAGCC GAGGGTCGTGTATACTAAAGCTGGTATCAATGTATATTCGAAATCGCCTA GCTCTTTGGAACGGTACAGATATTTGGGGACATCTGACGATCCCTTACTG ACAGTGCTTTCCCATGCTTCTCCCCAATTCTTCATATTGATCAACATGGA TTTCGATTCGACATCAGTTTCGTTTTCGTACTTTTTCACAAAACGGCTCC AAGTTGTATTACCAATCAAACTGTATTTTTGCTCTATTCGACCAATGAAA TATGTTTCTATGTTTCTATAGACGGGAATCGTTGTATTAGCCTCTAATGT TTGTTCGTTAGACGAATACAATTTCCAGACGACTTGAAAGTAGGGTTTAT CATCGAATAAAATAGTCGCATTAACAGCACAAATGCTTATAGATACCGTC CACATGACGAGACATATCAAAACAGCATGTCTCTTTTTCATGTTACGATG TTTAAACGGGAAAACGACCCCCAAAACTCTATCAATTGTCAATGCTACTA AACTGAACATAGACATGAATAGTGTTATTCGTAAGTCAACGACTAGAGTT AAAATTTGTAGCTCTGACATTAACTTTATAGTATCTGTGTTTTTGACGTT CGGAAAATGGATTGAAAGTGAAGCAAGTATGACTACCACCACACCGAACA TTGCATCTGATATACCGAGATTAAGGAGATAAATTTGCGAGATGTGATAT TTCTTCTTCATCTCTCGAGCAATGAAAATTATCTCCACTATATTTAAGAG AAATAAAACCATGCcaaatatcaaataaaaaatagcgATGTCTTCCATGT CTAAAAAGTCGTATATAGTATTTCTAATGGACTCCATTTTACACAAAAAG TTGGTTCGTTTTAAAATTTATAATACCAAAGAAAGCTTGTCTGAATACTG AATAGCGATAAAATAAAGTTTAGTTT Run BLAST on NCBI transcript from alignment at sc0004201:2553..8044+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043408 ID=TCONS_00043408|Name=TCONS_00043408|organism=Clytia hemisphaerica|type=transcript|length=5492bp|location=Sequence derived from alignment at sc0004201:2553..8044+ (Clytia hemisphaerica) ATTAGAGCATTATTGTATCGTTATTACACCCCTTACCACGAGTTTTATTA
CACCCCTTACCACGAGTTTTATTACATTGAAAAACCTCAACCATTCTTGT
GACTTTGAGAATGTCTTAGGtcccttttctttttctttgaaacaccctaa
cttctttttggacctacctccagGTACCcaggtggaggtcctttaaatta
acccatgtccgtccgttcgttcgttcgttcgtccgtccgtctgttatcag
cttttctcgggattggctcattacttttttctgtttttttggcacaatga
tgcaaaatgatgattcctaaaaagtgacggagcccgattttcgaaaaaaa
aatttatgccggaaaaactgttttttttggcattttctcgagattttatc
attagttttttctgattttttgctcaaagatgcgtattaacaatgccgaa
aacatggccgagtccgatttttgagaattttttttccgtccgaaaatgcc
ggaaatcgttgttttttctggattttcattggactttttccttataattg
gatgtttttttcattcaaaaacattattaatagcaatgcccaccatcaag
catgtttcaattttcaataaaattgatttttgaagccggaactATTTAAA
AATCGCCGGAACAACGTATTTTCGCCGGAAAAACAGTATTTCTTGAATTT
CTCGAGCTATACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAAA
ATGACAATACCTAAAATGTGACGGAGCCCAAATCAAAAAATATATATTTC
CGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTCATTTTCGCATTT
TCGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTACATTTTCTCG
aattttcatccttagttttttctgatttttgcagaaagatgcctattcgc
aatgctcaaaacatggccgagttcgatttttgagaaaaaaatttttccgg
ttgaaaatgccggaaatcgccgtttttagAGATtgtcattggattttttc
cttatatttctatgtttttcacacaaaaatattattgataacaatgctca
ccatcaagcatgattcaattgtcaataNattttccggttgaaaatttttc
cttatatttctatgtttttcacacaaaaacattattgataacaatgctca
ccatcaagcatgattcaattgtcaataaaactgatttttgcgaccagaac
tttctatttattttttccctacaacccttccctcttccCGCATCAACATT
CAATGAtgtgatgaatttattgcgttatgcattttcgctaaacgctatat
tttctgactgatttttttcatttttctcctcgcattgctatctaactttc
atcatcaggtaggtccattcagcatctagcttgtttgtGTTCACCCCTCC
TCCATTTCTCACTTATTTCCATTTTGTGCATGTCAGAGCTTCCattattg
aatgaaaaagagGAAAGAGAAGCGGAGTTGATCATCGATATATTCGGCAT
GAATGTGGTATGTACATTTTTGTCTGTTTCTGTACCTATTTTGAACATTA
TAGTCCTTTGGCACAAAGCACTAAGTTTAAAAAGGTCTTTAAAGGGATAT
TAAAGAAGTATTGTAAAACATTTTGTGAACAACGTTTATTGTAATCACGT
GTCAAAATAAGATTCTGAGACATTAGAAACAATAAACATTGTTTTGACAT
CCGGCATGTTTTTAAATTTGGAATCCCAAAATATAACAGTGtctcgaaat
ttattttttcgggTTTTCAGGCTCAGCAATTGTATTCGAAATCGTGGAAG
CATCGGCAGACCTCGTTAACATCATTGGCAGATGAATTGAAACATTCGAC
CGAAGTAACAGAGGAACAACCACCCAAAAGTGTTTCTCGTGCTGTTCTGG
CCGTCCTCAAGAAATCCTTGAATGATCAAGTCTTCGTGGTAACTTACTAT
CCAGAATTTCAGTTTTAATTTAATTGCTGTTATGCACCTTACCTAGGATT
ACGTCATTATTTCGCAATTTGTTGAATTCcattttttcattattatagtt
ttattgaataaaaaactattttcaattttgttttgttttatggCCCGCTT
TTGTTTGAAGTCCTTTAAAGAAAGATCTCCAGTGCTCATGTTTAAGCAGG
TAAAGTATTTTAGTAGTTTGAGTTTATTGTAACATTGTCTTATTCCTTTG
CAGGTACTAAATGAGAGCACTACTCTCCTGAAAACATTATTGCAGAATTA
TATCCCTGAAAAGTCGTAAGTTTTTGAATAtgttgttggaaagatatcta
TTTTCAAAGGTGGATCGAAAACTATTAAAAAGTGCGTCTTTAGATGTAGT
ATTTTGTGTTGATCAAGTCAAATTTACACATACACTTCTTCCAATGGGAC
TGGTCTGGAGCACAGCTTTTAATTGTTTATTATAGTACAACTGACTGATT
GAAATAGTATTTTACATTGTGCTTGATATACATGTAAGTTTCCATCCGTG
ATATGTCTTTCTTCCTTTCTTTttaaggcttggaaaggctgaAGTTACTT
TTGTTCTGGACAAGGTACATTATTTCGATTTCCTGAAAGTTCTTCAGGGG
ATACTTTTAATCGGGAGGAATACTCTGACAACCGTGTTTATTTATTGAGA
CAACGTATATTTCAGGTTTTGCTAAAATTATGTAAGCTAGAGATTTCTAT
ATAAATagtaaaacattaaaaaataatagaatatattaaaatatattgaa
taaatagtttattaGAGAATATCTGTCATTATGGAATCAAACGTTCAAAT
TCCTGGAGGTAATTGCAATGAAAATCTAAAGTTTGCTTCTATAATGGCGG
CAGTTAGCCGGCTTGAAAAGTCTATTTACATCCGTGCATCTTTTTTCAGC
TCTTGCCGATTTTAATGAAGCGACTTGGTGATTCTGCTACACGGACACGC
AATTTAGCcagtgacgtcattattgatATTGCCAATTCGAAAGAGATCAA
GGTAgaagcaaaattaaaaattgtaaaatcaaCCGTCGAGTAGGTTCAAT
TCCCAATCACCAATTAATTTACCTTTGAGAGAATTAGGATGTGCATAAGT
GTCAATTATACTATCGACTAAGAAAATAGTAATAGTAGTAATAGTAGTGA
GCCTAAGCTCATCTATATAAATCAAACTTACAAACTTATATCATAATGTG
CATGTGACTTGTCGAAATTTACTTAAACCATCTGCATTGAAAATTCAACG
CGCCTTTTAAGGCAGATGCCATCCAATCACCACAATAGCGAGTTTGACTG
ACCTGAGGACGACGGAAAATCAACGCTTTTTACCATCCTTTATTTTACAA
ACCGAAGTTTTCGTTTATTTCAGTCACTTCgcccgtcctcaaaagtgcaa
atacataaactcgctaatatttAGTAAACTGAAGAATCCAGCCACATTCG
CCAGGTCATTCTTTTAAGTTCATCTTTCTTTGCACATTATAGAACTGTTC
ATCCATACCAAACATTGTATCTCAACCAATCAAAGCTAAGAAACAGGTAC
CTATTCACCTATATTCACCTATTCACCTATATTTCCCTTGTGTTAGCCAC
ATTTTTGCCCACTTAACAAACTGTAAGCCACAAATCCAATGAAAAATTTA
GCCCTTTGCTGGTAATGCTGAAAAGAAAGTATATTTCTGACTGCTTCCAT
TATTGAGAACTCTGCCCTAAAAATTTCTTGGTAGGGTAAGCCACATGACC
AGTAAGCCACATTTTTGCCCACAATTCATTTGCTTGTAACTCCCCTTTAA
GTAAGCCACAAAAATTCCCCCTTAATGCAATGGATAGCTAATTTCCTCAG
CTTAACCATCAAAGCAATCCTAAGTGTAAGTCACGTAATTTTCCCAAGTT
ATGGTCAACAATTTAGTggctgacagtaaaaatgtcacaaaacaggggtt
TATTTTTGATTGGAATCAAATGTTGTAGTGTAAAAGCTCACATCCtaaag
tttgataaaaaaaatattcagatCGCACATTGTCATGCAATGCTCTCAAA
AGATACGATGAAAGGTAAATCGCTCTAGTCAGAATACTTTTTGTCAAACA
TTTAGCTCGAATTCTTCTGTTTGTATGGTTTGATTTGACCCTTCTTGACT
TCTGAAACAACATTCTTGCCTCCTAAATCTTCGGCACGACGAactaaaat
ctattttattcaTGATTTTGAAGTACAGAAAAGGGTTAATGAATGAGTTT
AGACCAACAGGGATGAATAGCCATTTTTCATTGAGGACAGTCAAATCTTG
TCTTGTGAATACTATTGAAGCAAATATCGCAAACGGTAACCAACAAAGAG
CAAAAGCCAAAACAATAGCGATCGCCAGAACCATGAACTTTCTCTCTTTC
TGATTTCTCACCACTTCGGATGCATTCGAAGCTGTGTTACCATCTTTGCT
TTTCAGCTGTTGTTTACTTTTCCTCATCTTCCACCAAATTATTGTATAAG
CAGCGAACAAAAAGCCGAGGGTCGTGTATACTAAAGCTGGTATCAATGTA
TATTCGAAATCGCCTAGCTCTTTGGAACGGTACAGATATTTGGGGACATC
TGACGATCCCTTACTGACAGTGCTTTCCCATGCTTCTCCCCAATTCTTCA
TATTGATCAACATGGATTTCGATTCGACATCAGTTTCGTTTTCGTACTTT
TTCACAAAACGGCTCCAAGTTGTATTACCAATCAAACTGTATTTTTGCTC
TATTCGACCAATGAAATATGTTTCTATGTTTCTATAGACGGGAATCGTTG
TATTAGCCTCTAATGTTTGTTCGTTAGACGAATACAATTTCCAGACGACT
TGAAAGTAGGGTTTATCATCGAATAAAATAGTCGCATTAACAGCACAAAT
GCTTATAGATACCGTCCACATGACGAGACATATCAAAACAGCATGTCTCT
TTTTCATGTTACGATGTTTAAACGGGAAAACGACCCCCAAAACTCTATCA
ATTGTCAATGCTACTAAACTGAACATAGACATGAATAGTGTTATTCGTAA
GTCAACGACTAGAGTTAAAATTTGTAGCTCTGACATTAACTTTATAGTAT
CTGTGTTTTTGACGTTCGGAAAATGGATTGAAAGTGAAGCAAGTATGACT
ACCACCACACCGAACATTGCATCTGATATACCGAGATTAAGGAGATAAAT
TTGCGAGATGTGATATTTCTTCTTCATCTCTCGAGCAATGAAAATTATCT
CCACTATATTTAAGAGAAATAAAACCATGCcaaatatcaaataaaaaata
gcgATGTCTTCCATGTCTAAAAAGTCGTATATAGTATTTCTAATGGACTC
CATTTTACACAAAAAGTTGGTTCGTTTTAAAATTTATAATACCAAAGAAA
GCTTGTCTGAATACTGAATAGCGATAAAATAAAGTTTAGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00043408-exon-sc0004201-1491911889:2553..4109 | TCONS_00043408-exon-sc0004201-1491911889:2553..4109 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1510915933:2553..4109 | TCONS_00043408-exon-sc0004201-1510915933:2553..4109 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1575043694:2553..4109 | TCONS_00043408-exon-sc0004201-1575043694:2553..4109 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1491911889:4373..4540 | TCONS_00043408-exon-sc0004201-1491911889:4373..4540 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1510915933:4373..4540 | TCONS_00043408-exon-sc0004201-1510915933:4373..4540 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1575043694:4373..4540 | TCONS_00043408-exon-sc0004201-1575043694:4373..4540 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1491911889:4806..4867 | TCONS_00043408-exon-sc0004201-1491911889:4806..4867 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1510915933:4806..4867 | TCONS_00043408-exon-sc0004201-1510915933:4806..4867 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1575043694:4806..4867 | TCONS_00043408-exon-sc0004201-1575043694:4806..4867 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1491911889:5130..5166 | TCONS_00043408-exon-sc0004201-1491911889:5130..5166 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1510915933:5130..5166 | TCONS_00043408-exon-sc0004201-1510915933:5130..5166 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1575043694:5130..5166 | TCONS_00043408-exon-sc0004201-1575043694:5130..5166 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1491911889:5502..5603 | TCONS_00043408-exon-sc0004201-1491911889:5502..5603 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1510915933:5502..5603 | TCONS_00043408-exon-sc0004201-1510915933:5502..5603 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1575043694:5502..5603 | TCONS_00043408-exon-sc0004201-1575043694:5502..5603 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1491911889:6095..8044 | TCONS_00043408-exon-sc0004201-1491911889:6095..8044 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1510915933:6095..8044 | TCONS_00043408-exon-sc0004201-1510915933:6095..8044 | Clytia hemisphaerica | exon |
TCONS_00043408-exon-sc0004201-1575043694:6095..8044 | TCONS_00043408-exon-sc0004201-1575043694:6095..8044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0004201 | supercontig | sc0004201:2553..8044 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
Term | Definition |
GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
Term | Definition |
GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00043408 vs. Swiss-Prot (Human)
Match: CE104 (Centrosomal protein of 104 kDa OS=Homo sapiens GN=CEP104 PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 3.643e-20 Identity = 54/162 (33.33%), Postives = 93/162 (57.41%), Query Frame = 1
Query: 1498 LNEKEEREAELIIDIFGMNVAQQLYSKSWKHRQTSLTSLADELKHSTEVTEEQPPKSVSRAVLAVLKKSLNDQVFVVLNESTTLLKTLLQNYIPEKSLGKAEVTFVLDKLLPILMKRLGDSATRTRNLASDVIIDIANSKEIKNCSSIPNIVSQPIKAKKQV 1983
L EK REA ID+ G + + Y K+W +R+ +L +L+ +L T ++ K+ RA + ++++++ D V V S LLK ++ YIP+ L K E +++ +P+L+ R GDS+ R R A++ I ++A KE+K+ IP+ + QP+KA V
Sbjct: 420 LTEKALREASSAIDVLGETLVAEAYCKTWSYREDALLALSKKLMEMPVGTPKEDLKNTLRASVFLVRRAIKDIVTSVFQASLKLLKMIITQYIPKHKLSKLETAHCVERTIPVLLTRTGDSSARLRVTAANFIQEMALFKEVKSLQIIPSYLVQPLKANSSV 581
The following BLAST results are available for this feature:
|