|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043421 ID=TCONS_00043421|Name=TCONS_00043421|organism=Clytia hemisphaerica|type=transcript|length=839bp
CTAACACTAAATCCtaatcattttctttctttatagaTGTACTTGAAAGG
TGTTCTGTGCCTCTTGGCACTGTATCAAGTCCAATGTTATATCAAGCATG
AAGAAGGACGAGGACCAATGTACAAGCTAAGTGCTGTTAAAGACACATTC
TTGGAAAGATATGGTGTCTCTTGGGATAGACCGTCATTTGGTCAAAACCT
TATCGGTAGACATCGTCAATATCCTGTCAAAAGAACCCTCATCCAATTCG
AAAACCTCCCAGCTAGTGTCTGCCCTGTTGGAAAGATCGAATGGGCTAAA
ATCTACATGTATTTCGTCTATCGCCACCGTCCAAGTTGGCactcatcttc
atcttcaccTTGGCTCGACTACGAAATCAACATTCATCGTGTGAAACGAT
CCTGGGAAGAGAGCTATGCCCGACCCCGATACCGATGTCGATCATGCCCA
CAGAATGCCTGGTACGCACCATATTTGGATCTTGGTCGTGATGCAGTCAA
CGAGCCAGAATGTAAGAAAACCACAATCTACTCTTGGACACCAAGACCAT
CTTGGGTAGCTTTTGATGTGACTGGTTCAATGAAAGCTTGGGCTGAAGGT
TCACCCAATTACGGAGTTTTGATCAAAGTCAAAGATGAGGAAACCGATGG
TGTTGATTTAAGATTCTGGAATCGACACTACAGTGATGCAAAGCTTCGTC
CATACGTAATTGTTCAATGCAAAAAATAAACTGttagtttttgaattttc
ttctttggggtcataatattaaaataattttgttcaatgttttcaaagta
aaatttgttgtgtttgaaaatataatttttctttgGGAA Run BLAST on NCBI protein sequence of TCONS_00043421-protein >TCONS_00043421-protein ID=TCONS_00043421-protein|Name=TCONS_00043421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MYLKGVLCLLALYQVQCYIKHEEGRGPMYKLSAVKDTFLERYGVSWDRPS
FGQNLIGRHRQYPVKRTLIQFENLPASVCPVGKIEWAKIYMYFVYRHRPS
WHSSSSSPWLDYEINIHRVKRSWEESYARPRYRCRSCPQNAWYAPYLDLG
RDAVNEPECKKTTIYSWTPRPSWVAFDVTGSMKAWAEGSPNYGVLIKVKD
EETDGVDLRFWNRHYSDAKLRPYVIVQCKK Run BLAST on NCBI transcript from alignment at sc0004210:3974..4812 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043421 ID=TCONS_00043421|Name=TCONS_00043421|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at sc0004210:3974..4812 (Clytia hemisphaerica)
TTCCcaaagaaaaattatattttcaaacacaacaaattttactttgaaaa
cattgaacaaaattattttaatattatgaccccaaagaagaaaattcaaa
aactaaCAGTTTATTTTTTGCATTGAACAATTACGTATGGACGAAGCTTT
GCATCACTGTAGTGTCGATTCCAGAATCTTAAATCAACACCATCGGTTTC
CTCATCTTTGACTTTGATCAAAACTCCGTAATTGGGTGAACCTTCAGCCC
AAGCTTTCATTGAACCAGTCACATCAAAAGCTACCCAAGATGGTCTTGGT
GTCCAAGAGTAGATTGTGGTTTTCTTACATTCTGGCTCGTTGACTGCATC
ACGACCAAGATCCAAATATGGTGCGTACCAGGCATTCTGTGGGCATGATC
GACATCGGTATCGGGGTCGGGCATAGCTCTCTTCCCAGGATCGTTTCACA
CGATGAATGTTGATTTCGTAGTCGAGCCAAggtgaagatgaagatgagtG
CCAACTTGGACGGTGGCGATAGACGAAATACATGTAGATTTTAGCCCATT
CGATCTTTCCAACAGGGCAGACACTAGCTGGGAGGTTTTCGAATTGGATG
AGGGTTCTTTTGACAGGATATTGACGATGTCTACCGATAAGGTTTTGACC
AAATGACGGTCTATCCCAAGAGACACCATATCTTTCCAAGAATGTGTCTT
TAACAGCACTTAGCTTGTACATTGGTCCTCGTCCTTCTTCATGCTTGATA
TAACATTGGACTTGATACAGTGCCAAGAGGCACAGAACACCTTTCAAGTA
CAtctataaagaaagaaaatgattaGGATTTAGTGTTAG Coding sequence (CDS) from alignment at sc0004210:3974..4812 >TCONS_00043421 ID=TCONS_00043421|Name=TCONS_00043421|organism=Clytia hemisphaerica|type=CDS|length=693bp|location=Sequence derived from alignment at sc0004210:3974..4812 (Clytia hemisphaerica)
TTATTTTTTGCATTGAACAATTACGTATGGACGAAGCTTTGCATCACTGT
AGTGTCGATTCCAGAATCTTAAATCAACACCATCGGTTTCCTCATCTTTG
ACTTTGATCAAAACTCCGTAATTGGGTGAACCTTCAGCCCAAGCTTTCAT
TGAACCAGTCACATCAAAAGCTACCCAAGATGGTCTTGGTGTCCAAGAGT
AGATTGTGGTTTTCTTACATTCTGGCTCGTTGACTGCATCACGACCAAGA
TCCAAATATGGTGCGTACCAGGCATTCTGTGGGCATGATCGACATCGGTA
TCGGGGTCGGGCATAGCTCTCTTCCCAGGATCGTTTCACACGATGAATGT
TGATTTCGTAGTCGAGCCAAggtgaagatgaagatgagtGCCAACTTGGA
CGGTGGCGATAGACGAAATACATGTAGATTTTAGCCCATTCGATCTTTCC
AACAGGGCAGACACTAGCTGGGAGGTTTTCGAATTGGATGAGGGTTCTTT
TGACAGGATATTGACGATGTCTACCGATAAGGTTTTGACCAAATGACGGT
CTATCCCAAGAGACACCATATCTTTCCAAGAATGTGTCTTTAACAGCACT
TAGCTTGTACATTGGTCCTCGTCCTTCTTCATGCTTGATATAACATTGGA
CTTGATACAGTGCCAAGAGGCACAGAACACCTTTCAAGTACAt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043421-exon-sc0004210-1491911889:3974..4812 | TCONS_00043421-exon-sc0004210-1491911889:3974..4812 | Clytia hemisphaerica | exon |
| TCONS_00043421-exon-sc0004210-1510915933:3974..4812 | TCONS_00043421-exon-sc0004210-1510915933:3974..4812 | Clytia hemisphaerica | exon |
| TCONS_00043421-exon-sc0004210-1575043694:3974..4812 | TCONS_00043421-exon-sc0004210-1575043694:3974..4812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004210 | supercontig | sc0004210:3974..4812 . |
Blast
The following BLAST results are available for this feature:
|
