TCONS_00043430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043430
Unique NameTCONS_00043430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length485

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043430 ID=TCONS_00043430|Name=TCONS_00043430|organism=Clytia hemisphaerica|type=transcript|length=485bp
CAACAGGCTTGTCAACAGCCAAGGATTTAGAAATCTTAGTTGACAAATGC
AAAATTTGACTCAaactttaataaaatttttaatttttatctaTTAGAAG
TTCAGCTTTAGGATTACCAGATAAAAAGACCGGACGAGTAAGACCTGCGT
TAAATCCATTCATCATTAATGAATTATCAACATATACAACAAGGAGGTGG
CCATTTGGTTCAGCAGGAGGATGCAGAGAAACTGATGTTACCAAAGTCAT
CAATGTCAAGTGTAACACTGCACGAAAGCCATCTTCAAGCAAAAAGTCGA
ACGCGGATGACGAAGCGGAAGAATAACACCGCCCGCCTCAGAAACTACCC
GTCCGCCCGTGAGATCGCGGTTTACCATTCGTTTGCCTTTTATCTTTTAT
TAGCGCTGGATCATTTGGtctgtaattatttttttaaggaGATTTCATTC
TCTTTTTATTAATTCGTGAATCTCAAGAAACTTAC
Run BLAST on NCBI

transcript from alignment at sc0004216:4484..6464-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043430 ID=TCONS_00043430|Name=TCONS_00043430|organism=Clytia hemisphaerica|type=transcript|length=1981bp|location=Sequence derived from alignment at sc0004216:4484..6464- (Clytia hemisphaerica)
CAACAGGCTTGTCAACAGCCAAGGATTTAGAAATCTTAGTTGACAAATGC
AAAATTTGACTCAAACTTTAATAAAATTTTTAATTTTTATCTATTAGAAG
TTCAGCTTTAGGATTACCAGATAAAAAGACCGGACGAGTAAGACCTGCGT
TAAATCCATTCATCATTAATGAATTATCAAGTAAGTAAAATGCTTTCCTC
TACAAATGACGATTGAAAATATAATTCCTTTATGTCACCTTTATCCTAAT
TTCAGCTGATTTTCTGATACAGAAAAGACAAGTCAAATTTAACTAATTGT
CCCAATTTAATTTAATTTTAGAGAATTAAATTTAATTTAGACATTAAGTT
CATCCTCTAGATTTGCTGAATTTGAAATAGCAGGGTCCGCCAGGCCTGTA
GGACAATGAATAATTTTGTCTCACCTAGGAGGGAAAAGGCAATTTGTTTT
TTTAATCTTAGCCTTCTCAAATGTCATTGAACGCATAAGAAAAAAATATC
TATTTTTAATCATGTTAATATTCAAAACAAAAAAAAATTTATTTTGCAAT
TTTGATAACTTCAATTACAAAGGAGCCCCCCCCAGCAGATCCTCAATTCG
AAATTCACGCATTCACGCAAATTTTCTTCGAGTTTCACGCAATCGGAAAA
TTTTTTAGGAAAAATCAGGGAAACTTTGACTTTCAAACTATGACTTGGGC
AGAAATCAAATTTCTTGCCATATATTGGATAATCCAAGATTTTCTCATGA
AAAATCTTAAATGTTACGGAAATCGTGAATTTTTTTAGAAGAAAACTGCT
ATGGAAAATCCATCCACAGGGGGAGGTAACGGACTATAACTTAAACCGCC
CAAATATGGCAGAAGAAAGGAAGGATAAAACTGGATAAAATTCAACAATT
ATGTAAGTTTCCAACTCATAATAATTGGAAAATTAGGAAAAATTATCAGT
CAGCTGGGCAGCGTGAACACAAGTTACTTGCGATTGTGGCCTTAGGATGC
TAGTGTAGGTTGTGAACATTTCATTTTGTTGCTTTTTATTGCTACGTTGT
TTAAATCTAAAAAACAGCCGTGCTCCCTTGTTTGATAGCCCGCACAAACC
TTGCATTTTCGTAGAGTTATTTTTCTCTGAAGAAAGTCCAATCACATTTT
CCATGACACGTTTGAGTATGAACAATTCTTCCTAGTTTAATACCAAATCA
CTTAAAATATTCCTTTTTCATTGCACAAACATTTATAGAAATTTTGCTGA
GAATTCATTTTAGTTTCTTCTCCTGGTAAACACCATCTTTATTCCAGTTA
TGCATCAAGGTTTTGTACTTTCAGAAGTTGACAGAGGACTAATAAAAATA
AAGACTTACCTGAATGATTATTTATCATGATTTTGCTCAATTTTAGCATA
TACAACAAGGAGGTGGCCATTTGGTTCAGCAGGAGGATGCAGAGAAACTG
ATGTTACCAAAGTCATCAATGTCAAGTGTAACACTGCACGAAAGCCATGT
AAGTAGTTCATTGTAGATGATAAAAGAGATTTTTGTAGATTGCTGCAGTT
TTATTAAAAATTGGAAATTTCTGACTTCGATTCACGGCTTCGCTTCTTGG
GGAAAGAAGTAGATCACGTTTGTTTGTTTTGGTCAATCGTTCCATTTTGT
GTACTTTACAGAATGTTTTATAAGGGGTCTTTTACAGAACGCAATAAAAA
GTCTAATGCACAATGTTTATTTTGCCAAACAGTAGCGCATTTTCATTTGC
AGTATACGCGGGATTTTTTCTCTTTCAGCTTCAAGCAAAAAGTCGAACGC
GGATGACGAAGCGGAAGAATAACACCGCCCGCCTCAGAAACTACCCGTCC
GCCCGTGAGATCGCGGTTTACCATTCGTTTGCCTTTTATCTTTTATTAGC
GCTGGATCATTTGGTCTGTAATTATTTTTTTAAGGAGATTTCATTCTCTT
TTTATTAATTCGTGAATCTCAAGAAACTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027128XLOC_027128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043430-exon-sc0004216-1575043694:6285..6464TCONS_00043430-exon-sc0004216-1575043694:6285..6464Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1575043694:4967..5068TCONS_00043430-exon-sc0004216-1575043694:4967..5068Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1575043694:4484..4686TCONS_00043430-exon-sc0004216-1575043694:4484..4686Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1510915933:6285..6464TCONS_00043430-exon-sc0004216-1510915933:6285..6464Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1510915933:4967..5068TCONS_00043430-exon-sc0004216-1510915933:4967..5068Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1510915933:4484..4686TCONS_00043430-exon-sc0004216-1510915933:4484..4686Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1491911889:6285..6464TCONS_00043430-exon-sc0004216-1491911889:6285..6464Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1491911889:4967..5068TCONS_00043430-exon-sc0004216-1491911889:4967..5068Clytia hemisphaericaexon
TCONS_00043430-exon-sc0004216-1491911889:4484..4686TCONS_00043430-exon-sc0004216-1491911889:4484..4686Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004216supercontigsc0004216:4484..6464 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257085	0.125349	0.291085	0.611333	0.180202	0.711521	0.357347	0.597435	0.541524	0.54283	0.147068	0.590251	1.34376	1.2162	2.8968	2.73707	2.062	1.54646	1.6635	0.474671	0.449286	2.07153	0.823976	1.54253	0.20265	0.127017	0.850946	2.14392	1.08709	0.703792
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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