TCONS_00043449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043449
Unique NameTCONS_00043449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043449 ID=TCONS_00043449|Name=TCONS_00043449|organism=Clytia hemisphaerica|type=transcript|length=1367bp
CTTATTAAAGTAATTGTGTTTGAACATTTTATTTGGATATTTAATCTTCA
AACCATGGACCTGTTCTGAGACTAAACTGATAtgatatgtttttttctta
ggaaattaaTAACATAACAAACACTATGGATGAAACAGAAGAGAGATTGA
GAACTATTCTTAGGCAAGAACTTGACAAGCACAGAAATGATCGGATTCCA
CCAAATTTGTATGGGAAGACCCAAACGTTGATAAGGGACATAGCTTCATC
TGTTGCCCCTCAGCTAAGGATGCAAAATTCCATACAAAATCAGTCTAATG
GTAATGAACCTAATCAAGCTAAGCTCCCATTTGAGGTAGATAGATTGCGT
AAACCTGCGAAACAAtctagaaatagaaaaaacaaaactcaTCCTTATAG
GCTATCAGCTGCAACCCAAAAGGAGCCCAAATTGAAAACAATTAAAGTAT
GTTTACTCGATTATGATTATGAACTAAGAGGTGATAAATATCGCTTTGAA
ACTGACGAAATCGTAAACACTTGGTATGTGGATATAGATCTTCAATCGAC
CGAAGCCAAAGTACGTGCTTGTTTGGTCGAGGTTTTTAAGAAGAAATTAG
ATTTGATTGGCAGCAGTGATTTTGAATTTGTAGAGTGCAATCAACGAACA
ATTTCAATTCCAGAAACAGCTCCAGGAATGGAGTGGAATGCAGCCCGTCT
AAAGGTCCTTTGGGGCCAGGGAAAGTTGTATTGCAGGCTTCGCCACATAC
CTGCTCATGCCCTTCAATCAGAAAACGTTCCCACTCTAGAAGAGGAAGAG
CCTCCACATCAGTTGATATCTACTGACACTATTTCAAAAGCCACCTCATC
TCCACCTACATCTAGTAGAACCAGAACTTCATGGTCTGCAATTAGCTCCC
AGCTTTTAACATCTGCTACCCATCTACCTACATCTACAACAGCTAGCTGT
ACTATAACTGCACCAACGTCAAATGTACAGAGCTTGCTTATTGGATCATC
ACAAGAGCGAAAAGATTTGAAGGAAGAGATTGATGATGCTTTACGTAAAA
GTGAAGCAGCTGATTGGGAGAAGGCTAACAAGTCCAAAGATGAAGAGGTA
TTAAAGAAGTTGCAACAGGATCGTTTGTCAAGAGTGCTTCCTGAGCCTGA
GTTAATCGAAGAACATACAGTTATTTCAGTGAGACACAAAACTCTAGGAA
CAAAAAGAAGACTGTTCCCACAAAATGCTACATTTGCAAACGTTTATGAT
TGGGTTGGTTCACTATCAGAAATACCTAAATTCTTTGGCCTTCACATCCC
AAATCAAAGAACTGTGCAATGCTGGGAAAAGGTTGAATCGTTTGGAAAAG
AAGTCTTAGTAATGGAG
Run BLAST on NCBI

protein sequence of TCONS_00043449-protein

>TCONS_00043449-protein ID=TCONS_00043449-protein|Name=TCONS_00043449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MDETEERLRTILRQELDKHRNDRIPPNLYGKTQTLIRDIASSVAPQLRMQ
NSIQNQSNGNEPNQAKLPFEVDRLRKPAKQSRNRKNKTHPYRLSAATQKE
PKLKTIKVCLLDYDYELRGDKYRFETDEIVNTWYVDIDLQSTEAKVRACL
VEVFKKKLDLIGSSDFEFVECNQRTISIPETAPGMEWNAARLKVLWGQGK
LYCRLRHIPAHALQSENVPTLEEEEPPHQLISTDTISKATSSPPTSSRTR
TSWSAISSQLLTSATHLPTSTTASCTITAPTSNVQSLLIGSSQERKDLKE
EIDDALRKSEAADWEKANKSKDEEVLKKLQQDRLSRVLPEPELIEEHTVI
SVRHKTLGTKRRLFPQNATFANVYDWVGSLSEIPKFFGLHIPNQRTVQCW
EKVESFGKEVLVME
Run BLAST on NCBI

transcript from alignment at sc0004230:19..1732-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043449 ID=TCONS_00043449|Name=TCONS_00043449|organism=Clytia hemisphaerica|type=transcript|length=1714bp|location=Sequence derived from alignment at sc0004230:19..1732- (Clytia hemisphaerica)
CTTATTAAAGTAATTGTGTTTGAACATTTTATTTGGATATTTAATCTTCA
AACCATGGACCTGTTCTGAGACTAAACTGATATGATATGTTTTTTTCTTA
GGAAATTAATAACATAACAAACACTATGGATGAAACAGAAGAGAGATTGA
GAACTATTCTTAGGCAAGAACTTGACAAGCACAGAAATGATCGGATTCCA
CCAAATTTGTATGGGAAGACCCAAACGTTGATAAGGGACATAGCTTCATC
TGTTGCCCCTCAGCTAAGGATGCAAAATTCCATACAAAATCAGTCTAATG
GTAATGAACCTAATCAAGCTAAGCTCCCATTTGAGGTAGATAGATTGCGT
AAACCTGCGAAACAATCTAGAAATAGAAAAAACAAAACTCATCCTTATAG
GCTATCAGCTGCAACCCAAAAGGAGCCCAAATTGAAAACAATTAAAGTAT
GTTTACTCGATTATGATTATGAACTAAGAGGTGATAAATATCGCTTTGAA
ACTGACGAAATCGTAAACACTTGGTATGTGGATATAGATCTTCAATCGAC
CGAAGCCAAAGTACGTGCTTGTTTGGTCGAGGTTTTTAAGAAGAAATTAG
ATTTGATTGGCAGCAGTGATTTTGAATTTGTAGAGTGCAATCAACGAACA
ATTTCAATTCCAGAAACAGCTCCAGGAATGGAGTGGAATGCAGCCCGTCT
AAAGGTCCTTTGGGGCCAGGGAAAGTTGTATTGCAGGCTTCGCCACATAC
CTGCTCATGCCCTTCAATCAGAAAACGTTCCCACTCTAGAAGAGGAAGAG
CCTCCACATCAGTTGATATCTACTGACACTATTTCAAAAGCCACCTCATC
TCCACCTACATCTAGTAGAACCAGAACTTCATGGTCTGCAATTAGCTCCC
AGCTTTTAACATCTGCTACCCATCTACCTACATCTACAACAGCTAGCTGT
ACTATAACTGCACCAACGTCAAATGTACAGGTTGGTTTATTGATTTGTGC
AAGAAATTTTTACCAGAAAAATGATATTCACAAGACATGAGATTTTATCC
TCTCATCAGTTATGTTCAGAGTACAATTTTTTTCTTAACTGCATAACCAA
TATTTTCTGACTTTTTCACTATCAATGCACTATTAACGCAAAATAGGCTG
GAAACTTGTACAATTTGATTCATTGTACTCAAAAGTTTGAAAATGTTTAA
ATTTTACTTGACTTGATCTCGTAATTAATTGCAAAACATTTTTTTCAAAA
CAAGCTTTTTGTACACTTATCTTTCAAATCCCAATTGTATCTAACCTATT
TTGCCTACTATTTTTTTGTGTCCATAGAGCTTGCTTATTGGATCATCACA
AGAGCGAAAAGATTTGAAGGAAGAGATTGATGATGCTTTACGTAAAAGTG
AAGCAGCTGATTGGGAGAAGGCTAACAAGTCCAAAGATGAAGAGGTATTA
AAGAAGTTGCAACAGGATCGTTTGTCAAGAGTGCTTCCTGAGCCTGAGTT
AATCGAAGAACATACAGTTATTTCAGTGAGACACAAAACTCTAGGAACAA
AAAGAAGACTGTTCCCACAAAATGCTACATTTGCAAACGTTTATGATTGG
GTTGGTTCACTATCAGAAATACCTAAATTCTTTGGCCTTCACATCCCAAA
TCAAAGAACTGTGCAATGCTGGGAAAAGGTTGAATCGTTTGGAAAAGAAG
TCTTAGTAATGGAG

Coding sequence (CDS) from alignment at sc0004230:19..1732-

>TCONS_00043449 ID=TCONS_00043449|Name=TCONS_00043449|organism=Clytia hemisphaerica|type=CDS|length=2484bp|location=Sequence derived from alignment at sc0004230:19..1732- (Clytia hemisphaerica)
AGCTTGCTTATTGGATCATCACAAGAGCGAAAAGATTTGAAGGAAGAGAT
TGATGATGCTTTACGTAAAAGTGAAGCAGCTGATTGGGAGAAGGCTAACA
AGTCCAAAGATGAAGAGGTATTAAAGAAGTTGCAACAGGATCGTTTGTCA
AGAGTGCTTCCTGAGCCTGAGTTAATCGAAGAACATACAGTTATTTCAGT
GAGACACAAAACTCTAGGAACAAAAAGAAGACTGTTCCCACAAAATGCTA
CATTTGCAAACGTTTATGATTGGGTTGGTTCACTATCAGAAATACCTAAA
TTCTTTGGCCTTCACATCCCAAATCAAAGAACTGTGCAATGCTGGGAAAA
GGTTGAATCGTTTGGAAAAGAAGTCTTAGTAATGGAGATGGATGAAACAG
AAGAGAGATTGAGAACTATTCTTAGGCAAGAACTTGACAAGCACAGAAAT
GATCGGATTCCACCAAATTTGTATGGGAAGACCCAAACGTTGATAAGGGA
CATAGCTTCATCTGTTGCCCCTCAGCTAAGGATGCAAAATTCCATACAAA
ATCAGTCTAATGGTAATGAACCTAATCAAGCTAAGCTCCCATTTGAGGTA
GATAGATTGCGTAAACCTGCGAAACAATCTAGAAATAGAAAAAACAAAAC
TCATCCTTATAGGCTATCAGCTGCAACCCAAAAGGAGCCCAAATTGAAAA
CAATTAAAGTATGTTTACTCGATTATGATTATGAACTAAGAGGTGATAAA
TATCGCTTTGAAACTGACGAAATCGTAAACACTTGGTATGTGGATATAGA
TCTTCAATCGACCGAAGCCAAAGTACGTGCTTGTTTGGTCGAGGTTTTTA
AGAAGAAATTAGATTTGATTGGCAGCAGTGATTTTGAATTTGTAGAGTGC
AATCAACGAACAATTTCAATTCCAGAAACAGCTCCAGGAATGGAGTGGAA
TGCAGCCCGTCTAAAGGTCCTTTGGGGCCAGGGAAAGTTGTATTGCAGGC
TTCGCCACATACCTGCTCATGCCCTTCAATCAGAAAACGTTCCCACTCTA
GAAGAGGAAGAGCCTCCACATCAGTTGATATCTACTGACACTATTTCAAA
AGCCACCTCATCTCCACCTACATCTAGTAGAACCAGAACTTCATGGTCTG
CAATTAGCTCCCAGCTTTTAACATCTGCTACCCATCTACCTACATCTACA
ACAGCTAGCTGTACTATAACTGCACCAACGTCAAATGTACAGAGCTTGCT
TATTGGATCATCACAAGAGCGAAAAGATTTGAAGGAAGAGATTGATGATG
CTTTACGTAAAAGTGAAGCAGCTGATTGGGAGAAGGCTAACAAGTCCAAA
GATGAAGAGGTATTAAAGAAGTTGCAACAGGATCGTTTGTCAAGAGTGCT
TCCTGAGCCTGAGTTAATCGAAGAACATACAGTTATTTCAGTGAGACACA
AAACTCTAGGAACAAAAAGAAGACTGTTCCCACAAAATGCTACATTTGCA
AACGTTTATGATTGGGTTGGTTCACTATCAGAAATACCTAAATTCTTTGG
CCTTCACATCCCAAATCAAAGAACTGTGCAATGCTGGGAAAAGGTTGAAT
CGTTTGGAAAAGAAGTCTTAGTAATGGAGATGGATGAAACAGAAGAGAGA
TTGAGAACTATTCTTAGGCAAGAACTTGACAAGCACAGAAATGATCGGAT
TCCACCAAATTTGTATGGGAAGACCCAAACGTTGATAAGGGACATAGCTT
CATCTGTTGCCCCTCAGCTAAGGATGCAAAATTCCATACAAAATCAGTCT
AATGGTAATGAACCTAATCAAGCTAAGCTCCCATTTGAGGTAGATAGATT
GCGTAAACCTGCGAAACAATCTAGAAATAGAAAAAACAAAACTCATCCTT
ATAGGCTATCAGCTGCAACCCAAAAGGAGCCCAAATTGAAAACAATTAAA
GTATGTTTACTCGATTATGATTATGAACTAAGAGGTGATAAATATCGCTT
TGAAACTGACGAAATCGTAAACACTTGGTATGTGGATATAGATCTTCAAT
CGACCGAAGCCAAAGTACGTGCTTGTTTGGTCGAGGTTTTTAAGAAGAAA
TTAGATTTGATTGGCAGCAGTGATTTTGAATTTGTAGAGTGCAATCAACG
AACAATTTCAATTCCAGAAACAGCTCCAGGAATGGAGTGGAATGCAGCCC
GTCTAAAGGTCCTTTGGGGCCAGGGAAAGTTGTATTGCAGGCTTCGCCAC
ATACCTGCTCATGCCCTTCAATCAGAAAACGTTCCCACTCTAGAAGAGGA
AGAGCCTCCACATCAGTTGATATCTACTGACACTATTTCAAAAGCCACCT
CATCTCCACCTACATCTAGTAGAACCAGAACTTCATGGTCTGCAATTAGC
TCCCAGCTTTTAACATCTGCTACCCATCTACCTACATCTACAACAGCTAG
CTGTACTATAACTGCACCAACGTCAAATGTACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027145XLOC_027145Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043449-proteinTCONS_00043449-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043449-exon-sc0004230-1575043694:753..1732TCONS_00043449-exon-sc0004230-1575043694:753..1732Clytia hemisphaericaexon
TCONS_00043449-exon-sc0004230-1575043694:19..405TCONS_00043449-exon-sc0004230-1575043694:19..405Clytia hemisphaericaexon
TCONS_00043449-exon-sc0004230-1510915933:753..1732TCONS_00043449-exon-sc0004230-1510915933:753..1732Clytia hemisphaericaexon
TCONS_00043449-exon-sc0004230-1510915933:19..405TCONS_00043449-exon-sc0004230-1510915933:19..405Clytia hemisphaericaexon
TCONS_00043449-exon-sc0004230-1491911889:753..1732TCONS_00043449-exon-sc0004230-1491911889:753..1732Clytia hemisphaericaexon
TCONS_00043449-exon-sc0004230-1491911889:19..405TCONS_00043449-exon-sc0004230-1491911889:19..405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004230supercontigsc0004230:19..1732 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0796968	1.16834	0.836604	0.275894	0.575254	0.000141676	0.174061	0.281123	0.47198	0.09727	0.511931	0.963972	0.601523	0.485494	0.257014	0.477562	0.387062	0.210109	0.32047	0	0.371456	0.098681	0.00965852	0.226143	0	0.137715	0.198753
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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