TCONS_00043461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043461
Unique NameTCONS_00043461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043461 ID=TCONS_00043461|Name=TCONS_00043461|organism=Clytia hemisphaerica|type=transcript|length=689bp
tttgccattttgctatttttcagCATTGTTTGGAAAGGAGATATATTATT
ATCCCTTGTTTTTACAAATGTTGGTCGGTCTTGGTTACCcctcaaagtca
aaaaatgttatacgTTTGCAGCAGCAAGCTATTCAAGAGACCACAACTAA
TAAAATGTCGCCTAACAGTCCAAAGTGCCTCATAAACGGGAGAGATGGGG
TCCTTATTGCCAGGGGGTTATAAATTATGTTTATGTAGTCAAAATCAGGC
AGAGCAAAATAAGGtactttcttttttgaaagctgaagatattttcataa
attaaaaaTCTCATGAGACGCCCCAAGTGTTTGGCGCTTTGGTTTTTTTT
TCGAGGCGTTACAGTATGGcgtgaattttcgaaaaatttggagTGATGAA
AATTAAATGCCTGTTTGATCatgaaatcaagatttttaaggCGTGATGGT
GTAAATTTTACATTGTAAAACTTCAGATTTTTCATTAAGGTGAGGGTGGA
CAAACCAAAATCAGTCATTTACCCCTGGGAATTTTACAATGACtctttac
ccccttggaaaaatgaaaaaacaccccctggaaatgttcgtccaaccCCC
CTGCATGGATATATAAATGGAATGGCCTattattggtggcaaaacaTTTG
CGTTCCCCAACTTTTTACTATGCAAGGACCCCCGGAAAA
Run BLAST on NCBI

transcript from alignment at sc0004241:7219..7907

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043461 ID=TCONS_00043461|Name=TCONS_00043461|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0004241:7219..7907 (Clytia hemisphaerica)
TTTTCCGGGGGTCCTTGCATAGTAAAAAGTTGGGGAACGCAAAtgttttg
ccaccaataatAGGCCATTCCATTTATATATCCATGCAGGGGggttggac
gaacatttccagggggtgttttttcatttttccaagggggtaaagaGTCA
TTGTAAAATTCCCAGGGGTAAATGACTGATTTTGGTTTGTCCACCCTCAC
CTTAATGAAAAATCTGAAGTTTTACAATGTAAAATTTACACCATCACGcc
ttaaaaatcttgatttcatGATCAAACAGGCATTTAATTTTCATCActcc
aaatttttcgaaaattcacgCCATACTGTAACGCCTCGAAAAAAAAACCA
AAGCGCCAAACACTTGGGGCGTCTCATGAGAtttttaatttatgaaaata
tcttcagctttcaaaaaagaaagtaCCTTATTTTGCTCTGCCTGATTTTG
ACTACATAAACATAATTTATAACCCCCTGGCAATAAGGACCCCATCTCTC
CCGTTTATGAGGCACTTTGGACTGTTAGGCGACATTTTATTAGTTGTGGT
CTCTTGAATAGCTTGCTGCTGCAAAcgtataacattttttgactttgagg
GGTAACCAAGACCGACCAACATTTGTAAAAACAAGGGATAATAATATATC
TCCTTTCCAAACAATGctgaaaaatagcaaaatggcaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027157XLOC_027157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043461-exon-sc0004241-1491911889:7219..7907TCONS_00043461-exon-sc0004241-1491911889:7219..7907Clytia hemisphaericaexon
TCONS_00043461-exon-sc0004241-1510915933:7219..7907TCONS_00043461-exon-sc0004241-1510915933:7219..7907Clytia hemisphaericaexon
TCONS_00043461-exon-sc0004241-1575043694:7219..7907TCONS_00043461-exon-sc0004241-1575043694:7219..7907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004241supercontigsc0004241:7219..7907 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.073912	0.360379	0.167374	0.0818746	0.199349	0.0787641	0	0.177923	0	0	0.673945	0.049225	0.14747	0	0.0839393	0.0900797	0.166456	0.0568708	0	0.246654	0.142925	0.313711	0.084746	0.0770464	0.158712	0	0.101348	0	0.164073	0.417911
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top