TCONS_00043463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043463
Unique NameTCONS_00043463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043463 ID=TCONS_00043463|Name=TCONS_00043463|organism=Clytia hemisphaerica|type=transcript|length=448bp
AATGATTTATTGTATATATTGTAAATTTATGTATAACCTTTGTTTAATTG
TCAGATACGATATGGTTAGTCCAAAGACTAGTGATATGGAATCAACTTCT
CCTGCTGATTTGGGATCTACCTGTACCAATGAATCTACAAATCCATTATG
TAGTTTGGAAAATACTCCTACAAAAGCCACCGCAAAGTCATCGTTTCTGA
ACACCGCTCTTGAATTTGACACTCCTACTAAAGCCACTAAAAGGTCATTG
TTAATGAATGTCACTCCTTCAAAAACTCCACCTGCTACCCCTTCAAAGGA
TTTGGCAGCCACTCCAACTTCTTCGGAATCGGATCGTGAAAAACAAGatc
TTCTTGGATACGTGGTGGAGATCGGTGATGAATGCACAAGCAAAAGTGAT
AAGAAGAATATTTATTTCGACATTGATTTCCAAAGATCCTCAACTGTC
Run BLAST on NCBI

protein sequence of TCONS_00043463-protein

>TCONS_00043463-protein ID=TCONS_00043463-protein|Name=TCONS_00043463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MIYCIYCKFMYNLCLIVRYDMVSPKTSDMESTSPADLGSTCTNESTNPLC
SLENTPTKATAKSSFLNTALEFDTPTKATKRSLLMNVTPSKTPPATPSKD
LAATPTSSESDREKQDLLGYVVEIGDECTSKSDKKNIYFDIDFQRSSTV
Run BLAST on NCBI

transcript from alignment at sc0004248:7162..7897+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043463 ID=TCONS_00043463|Name=TCONS_00043463|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at sc0004248:7162..7897+ (Clytia hemisphaerica)
AATGATTTATTGTATATATTGTAAATTTATGTATAACCTTTGTTTAATTG
TCAGATACGATATGGTTAGTCCAAAGACTAGTGATATGGAATCAACTTCT
CCTGCTGATTTGGGATCTACCTGTACCAATGAATCTACAAATCCATTATG
TAGTTTGGAAAATACTCCTACAAAAGCCACCGCAAAGTCATCGTTTCTGA
ACACCGCTCTTGAATTTGACACTCCTACTAAAGCCACTAAAAGGTCATTG
TTAATGAATGTCACTCCTTCAAAAACTCCACCTGCTACCCCTTCAAAGGA
TTTGGCAGCCACTCCAACTTCTTCGGAATCGGATCGTGAAAAACAAGGTA
CTAATTTCTTATATTTAAAGTTTAATGCTTTGTGCTCAATGATGTTCATT
CAATCAATTTGATTTTTGTTCTTTGTGAATtctgaagaaaaattattaac
tACACTTGATTGTACATTTTCACTTAGCCATCATTCACATGAATTTTCCN
GAATtctgaagaaaaattattaactACACTTGATTGTACATTTTCACTTA
GCCATCATTCACATGAATTTTCCCATGGCACTAAAATAACTTCACTTCTT
TTTATAAGTAAAATAtactatttttctattttcagatcTTCTTGGATACG
TGGTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGAAGAATATT
TATTTCGACATTGATTTCCAAAGATCCTCAACTGTC

Coding sequence (CDS) from alignment at sc0004248:7162..7897+

>TCONS_00043463 ID=TCONS_00043463|Name=TCONS_00043463|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at sc0004248:7162..7897+ (Clytia hemisphaerica)
ATGATTTATTGTATATATTGTAAATTTATGTATAACCTTTGTTTAATTGT
CAGATACGATATGGTTAGTCCAAAGACTAGTGATATGGAATCAACTTCTC
CTGCTGATTTGGGATCTACCTGTACCAATGAATCTACAAATCCATTATGT
AGTTTGGAAAATACTCCTACAAAAGCCACCGCAAAGTCATCGTTTCTGAA
CACCGCTCTTGAATTTGACACTCCTACTAAAGCCACTAAAAGGTCATTGT
TAATGAATGTCACTCCTTCAAAAACTCCACCTGCTACCCCTTCAAAGGAT
TTGGCAGCCACTCCAACTTCTTCGGAATCGGATCGTGAAAAACAAGatcT
TCTTGGATACGTGGTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATA
AGAAGAATATTTATTTCGACATTGATTTCCAAAGATCCTCAACTGTCATG
ATTTATTGTATATATTGTAAATTTATGTATAACCTTTGTTTAATTGTCAG
ATACGATATGGTTAGTCCAAAGACTAGTGATATGGAATCAACTTCTCCTG
CTGATTTGGGATCTACCTGTACCAATGAATCTACAAATCCATTATGTAGT
TTGGAAAATACTCCTACAAAAGCCACCGCAAAGTCATCGTTTCTGAACAC
CGCTCTTGAATTTGACACTCCTACTAAAGCCACTAAAAGGTCATTGTTAA
TGAATGTCACTCCTTCAAAAACTCCACCTGCTACCCCTTCAAAGGATTTG
GCAGCCACTCCAACTTCTTCGGAATCGGATCGTGAAAAACAAGatcTTCT
TGGATACGTGGTGGAGATCGGTGATGAATGCACAAGCAAAAGTGATAAGA
AGAATATTTATTTCGACATTGATTTCCAAAGATCCTCAACTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027159XLOC_027159Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043463-proteinTCONS_00043463-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043463-exon-sc0004248-1491911889:7162..7508TCONS_00043463-exon-sc0004248-1491911889:7162..7508Clytia hemisphaericaexon
TCONS_00043463-exon-sc0004248-1510915933:7162..7508TCONS_00043463-exon-sc0004248-1510915933:7162..7508Clytia hemisphaericaexon
TCONS_00043463-exon-sc0004248-1575043694:7162..7508TCONS_00043463-exon-sc0004248-1575043694:7162..7508Clytia hemisphaericaexon
TCONS_00043463-exon-sc0004248-1491911889:7797..7897TCONS_00043463-exon-sc0004248-1491911889:7797..7897Clytia hemisphaericaexon
TCONS_00043463-exon-sc0004248-1510915933:7797..7897TCONS_00043463-exon-sc0004248-1510915933:7797..7897Clytia hemisphaericaexon
TCONS_00043463-exon-sc0004248-1575043694:7797..7897TCONS_00043463-exon-sc0004248-1575043694:7797..7897Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004248supercontigsc0004248:7162..7897 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.01743	1.44755	0.336148	0.164434	28.0902	22.7629	12.8179	17.0782	11.0348	10.5245	7.52084	5.14552	3.42656	3.50906	2.39103	2.57559	8.69157	2.45085	2.19091	3.81799	9.47091	11.7911	2.48065	4.06139	4.54173	6.02944	4.53121	2.1589	2.28063	1.67864
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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