TCONS_00043489 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043489
Unique NameTCONS_00043489
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043489 ID=TCONS_00043489|Name=TCONS_00043489|organism=Clytia hemisphaerica|type=transcript|length=490bp
gttcttaagttgctcttaatattttgccatcggagccttatgttcttata
tagtttgtttttataaaaaacgtgtaatgcaTACTACAACTTATACTTTG
TTTATGACCACGCTCCAAATGTTTCATAAATATCCTGCGCCACAGTCAAC
AGGTTGATACTTTGATTTTCATCTGCATTGTACAACTATCATTTACGGTA
CAGTTATGACTGACTTGAAAACTGTGTTCTTTTTTAAGATATGGGTTTTG
ACTCAACTTTTTGTGAGTGTTTTGGGACAACCACGACCACCAGCACCACC
GCCATCTACCGAGACACTGTTACGAGAATTAAATAATTTACTGGATAATG
TCGTCATATTCGAAGCTCAGCCAGATTCAGAACTTGATTATCAACAAGCA
CATGACTTTTGTAAAGCTCGAAATGCTGTTTTGGGAAAGATCTTGAATgt
tcaagaaaacaaaattgtCAGTAACTCGCTGGCCTCTTTT
Run BLAST on NCBI

transcript from alignment at sc0004288:319..808-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043489 ID=TCONS_00043489|Name=TCONS_00043489|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at sc0004288:319..808- (Clytia hemisphaerica)
GTTCTTAAGTTGCTCTTAATATTTTGCCATCGGAGCCTTATGTTCTTATA
TAGTTTGTTTTTATAAAAAACGTGTAATGCATACTACAACTTATACTTTG
TTTATGACCACGCTCCAAATGTTTCATAAATATCCTGCGCCACAGTCAAC
AGGTTGATACTTTGATTTTCATCTGCATTGTACAACTATCATTTACGGTA
CAGTTATGACTGACTTGAAAACTGTGTTCTTTTTTAAGATATGGGTTTTG
ACTCAACTTTTTGTGAGTGTTTTGGGACAACCACGACCACCAGCACCACC
GCCATCTACCGAGACACTGTTACGAGAATTAAATAATTTACTGGATAATG
TCGTCATATTCGAAGCTCAGCCAGATTCAGAACTTGATTATCAACAAGCA
CATGACTTTTGTAAAGCTCGAAATGCTGTTTTGGGAAAGATCTTGAATGT
TCAAGAAAACAAAATTGTCAGTAACTCGCTGGCCTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027185XLOC_027185Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043489-exon-sc0004288-1575043694:319..808TCONS_00043489-exon-sc0004288-1575043694:319..808Clytia hemisphaericaexon
TCONS_00043489-exon-sc0004288-1510915933:319..808TCONS_00043489-exon-sc0004288-1510915933:319..808Clytia hemisphaericaexon
TCONS_00043489-exon-sc0004288-1491911889:319..808TCONS_00043489-exon-sc0004288-1491911889:319..808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004288supercontigsc0004288:319..808 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126255	0.303477	0.352366	1.2589	0	0	0.400107	0.374576	3.40924	1.94903	3.15296	1.03631	0.899096	0.663309	0	0.0769364	1.89259	0.991834	0.330821	0.280887	0	0	0.289524	0	0	0	0	0	0	0.285548
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043489 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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