TCONS_00043493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043493
Unique NameTCONS_00043493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043493 ID=TCONS_00043493|Name=TCONS_00043493|organism=Clytia hemisphaerica|type=transcript|length=261bp
TTAGATTTTTGTTCAGACCACAATGTTCGTTATTTATAATTCAATCAGCC
TATGCCCAGACTAGCTCTCAACAACGTGGTTGGATTTCTGCGAAACTTCC
TTTCAAAATCTTatcgagaaagaagaaggatgCTTGTACACAATttctgt
ttaatttttttgtcattcaaCCGTGTTGTGGCAACATCTCTCCTGCTTCC
AAGTACCATGAACAATAAGGATTATAATGTTTGAAAGGTATGTTGGTTTT
TCCTTGCTGTC
Run BLAST on NCBI

transcript from alignment at sc0004288:7238..7498

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043493 ID=TCONS_00043493|Name=TCONS_00043493|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0004288:7238..7498 (Clytia hemisphaerica)
GACAGCAAGGAAAAACCAACATACCTTTCAAACATTATAATCCTTATTGT
TCATGGTACTTGGAAGCAGGAGAGATGTTGCCACAACACGGttgaatgac
aaaaaaattaaacagaaATTGTGTACAAGcatccttcttctttctcgatA
AGATTTTGAAAGGAAGTTTCGCAGAAATCCAACCACGTTGTTGAGAGCTA
GTCTGGGCATAGGCTGATTGAATTATAAATAACGAACATTGTGGTCTGAA
CAAAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027187XLOC_027187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043493-exon-sc0004288-1491911889:7238..7498TCONS_00043493-exon-sc0004288-1491911889:7238..7498Clytia hemisphaericaexon
TCONS_00043493-exon-sc0004288-1510915933:7238..7498TCONS_00043493-exon-sc0004288-1510915933:7238..7498Clytia hemisphaericaexon
TCONS_00043493-exon-sc0004288-1575043694:7238..7498TCONS_00043493-exon-sc0004288-1575043694:7238..7498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004288supercontigsc0004288:7238..7498 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39057	1.40045	0.918007	1.06773	0.928346	0.782324	1.0848	1.92795	2.00681	0	0	0.430655	0.544452	0	1.80177	1.50683	1.05348	3.67946	0.745174	1.90057	0.953582	1.07502	0	2.52478	1.38852	0	3.98326	2.98641	4.73343	0.830887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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