TCONS_00043493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043493
Unique NameTCONS_00043493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length261

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043493 ID=TCONS_00043493|Name=TCONS_00043493|organism=Clytia hemisphaerica|type=transcript|length=261bp
TTAGATTTTTGTTCAGACCACAATGTTCGTTATTTATAATTCAATCAGCC
TATGCCCAGACTAGCTCTCAACAACGTGGTTGGATTTCTGCGAAACTTCC
TTTCAAAATCTTatcgagaaagaagaaggatgCTTGTACACAATttctgt
ttaatttttttgtcattcaaCCGTGTTGTGGCAACATCTCTCCTGCTTCC
AAGTACCATGAACAATAAGGATTATAATGTTTGAAAGGTATGTTGGTTTT
TCCTTGCTGTC
Run BLAST on NCBI

transcript from alignment at sc0004288:7238..7498

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043493 ID=TCONS_00043493|Name=TCONS_00043493|organism=Clytia hemisphaerica|type=transcript|length=261bp|location=Sequence derived from alignment at sc0004288:7238..7498 (Clytia hemisphaerica)
GACAGCAAGGAAAAACCAACATACCTTTCAAACATTATAATCCTTATTGT TCATGGTACTTGGAAGCAGGAGAGATGTTGCCACAACACGGttgaatgac aaaaaaattaaacagaaATTGTGTACAAGcatccttcttctttctcgatA AGATTTTGAAAGGAAGTTTCGCAGAAATCCAACCACGTTGTTGAGAGCTA GTCTGGGCATAGGCTGATTGAATTATAAATAACGAACATTGTGGTCTGAA CAAAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027187XLOC_027187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043493-exon-sc0004288-1491911889:7238..7498TCONS_00043493-exon-sc0004288-1491911889:7238..7498Clytia hemisphaericaexon
TCONS_00043493-exon-sc0004288-1510915933:7238..7498TCONS_00043493-exon-sc0004288-1510915933:7238..7498Clytia hemisphaericaexon
TCONS_00043493-exon-sc0004288-1575043694:7238..7498TCONS_00043493-exon-sc0004288-1575043694:7238..7498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004288supercontigsc0004288:7238..7498 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39057 1.40045 0.918007 1.06773 0.928346 0.782324 1.0848 1.92795 2.00681 0 0 0.430655 0.544452 0 1.80177 1.50683 1.05348 3.67946 0.745174 1.90057 0.953582 1.07502 0 2.52478 1.38852 0 3.98326 2.98641 4.73343 0.830887
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top