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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043507 ID=TCONS_00043507|Name=TCONS_00043507|organism=Clytia hemisphaerica|type=transcript|length=2321bp
TTTGAATTCTCCTAACTAAAAGTTTCTAGTACAATTCTCggtttttatga
agaaaatcgAAGCACGAGGAAGAAGCCATCCTTTTTCTACAAGTCAGCAT
CCCAACAAGTCAAGGTCTGCAGCTCCACTTAGCATATTTTGATATCTACA
ACAAATCTAAAGATGTTTTCTCCAACTACACCAAGGAAAAGACCAAGata
taataataacaacaaagTTCCAACCGaaACTGTTGATATGGTTGGGTATA
TCACTTGGGTTAAtccaaaaatttccaaatctgaGAAATCCTCATTTTTT
GACCTATACCTTGGGCTAGAAGAATCAGAGGTCCGAATTGTATCATTCAA
TACCGACATTCATTCCCAGTTGATGAAACGGATGAAAAAAggtatcattt
ttttcaaactttccaaGTCTAATGCAGACTGGATATACAGTGACACTCAT
CACTCGTCTTTTAATGATAAGGACCCGCCATTTGTATTTGTCAACCAATA
CAATGTTGTCAGCACGCCTTTGAAAGAAGCAATCGAGGAAAAGCCACTCT
ACTCGAGAGTATCAATGGATATCAAAGTCATCCAAATCAAGGATGAAGGA
ATATCGAAGGAGGGGTTGCCTTTTCAATCAGTTAGAATCATTGATAATTC
CATTAAGGAACCTAGAATGTTAACTTTGTTTGACAAACTTGTTACCAAAG
TAGCTGTACAGTCATCCTACACATTGTCATATGTCTCAATTCAATTATTT
GGTGGTCAAAGAGTATTCAAAACGACTGAAAGATCAACCATAACTACCAT
GAAGAAAGACACAATCAAATGCCCAAAGCAAGATGCTGCTGAAGAATTGA
TTGGTACAGTCATTACTGTAAACTTGAAATCAGTTGAAGCCAAGCTCTGT
TGCCCGCAGTGTGAAAACCCAGTGAATTCCTCTGGCGGAATTTCCATTTT
CTGTCATTTCTGTTCTGAAGCGGTGTCCCGATCTAGATTGTTGAAAATGG
GTGTATTGCAATTCAAAGTTCTCGAGGACAATTGCAGACTCCCTCGAGCT
TGAACattgagaaatttttgaatttctcatTATCTGACACTGATAGATTT
TTCTCGATGTTCATGGATTCCAAGCTTGTTATCAAGCACCTCAAAGGTGA
GGTTATTTTATTAAAACACTTTGAAAAAGACCAAAATTCAACATCAGCTC
CCACTGGTGGAAACTCTAAGAAAACTTAGAGCTTTGTTAACATTTTTTTA
GTATCAACGGATCTTatattttgttagttttttaacTGTTGTACATGTTA
ATATTTGTTCCCATTTGAACattgagaaatttttgaatttctcgtTATCT
GACACTGATAGATTTTTCTCGATGTTCATGGATTCCAAGCTCGTTATCAA
ACACCTCAAAGGTGAGGTTATTTTGTAAAAACACTTTGAAAAAGACCAAA
ATTCAACATCAGCTCCCGCTGGTGGAAACTCTAAGAAAACTTAGAGCttt
attaacatttttttaGTATCAACGGATCTTgtattttgttagttttttaa
cTGTTGTACATGTTAATATTTTATTATAACGAAAGTTCTTTCCTTTGTAA
TTTTAAAGTTCTTGAGGACAATTGCCGACTTCCTCGTTCACTGGAGTGTt
cccatttgaaaattttgaatttcaagttatCTGATACTGACGGATTGTTT
GCATGTTTATTGATTTTAAGCTCATTATCAAACACCTCAAAGGTGAGGTT
ATTTCAATAAAACGTTTCGAAAAGGACTAACCTGCATCATCTGGTACAAA
CTCTTTAAGAGCTTTATTACCATTTTTAAATTTAGTCTCAACTGATCCTA
CATTTTGTTAAGAtttctttttaagtgttttaaagttttctttccTTTGC
ATCACAAGGTTTAAACCGATTATAAATGTATTTACAGACTTTACAAAGTT
AGCATTACTTACATTTTAAGAGTTGTCCCAAACTCCTAACAGAACTGATG
TCTGTTCTGTAATCCTGTAGGTTTGATTTTTCTCGTGTAATTTTACtaag
tttttccatttttgacaTTGTGTAcattaacttatttttaaagcCTTATT
TTAACAAACATTtgcatttttagcaaaaaaatttttttttttttttttga
catttaatgtcaacttcttttgaaattaatatattttaCTACGTTTTACA
TATTTAGCAAAAATGTTTCGTTTTTTTGAAACATCATGTaaacttctttt
gaaatttgttgcatttttaaaaagtaataatgCATTCAATGCTTTTCTCT
CAAATTTCCCTCTTTTTTGTC Run BLAST on NCBI protein sequence of TCONS_00043507-protein >TCONS_00043507-protein ID=TCONS_00043507-protein|Name=TCONS_00043507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MFSPTTPRKRPRYNNNNKVPTETVDMVGYITWVNPKISKSEKSSFFDLYL
GLEESEVRIVSFNTDIHSQLMKRMKKGIIFFKLSKSNADWIYSDTHHSSF
NDKDPPFVFVNQYNVVSTPLKEAIEEKPLYSRVSMDIKVIQIKDEGISKE
GLPFQSVRIIDNSIKEPRMLTLFDKLVTKVAVQSSYTLSYVSIQLFGGQR
VFKTTERSTITTMKKDTIKCPKQDAAEELIGTVITVNLKSVEAKLCCPQC
ENPVNSSGGISIFCHFCSEAVSRSRLLKMGVLQFKVLEDNCRLPRA Run BLAST on NCBI transcript from alignment at sc0004301:3658..6859+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043507 ID=TCONS_00043507|Name=TCONS_00043507|organism=Clytia hemisphaerica|type=transcript|length=3202bp|location=Sequence derived from alignment at sc0004301:3658..6859+ (Clytia hemisphaerica)
TTTGAATTCTCCTAACTAAAAGTTTCTAGTACAATTCTCggtttttatga
agaaaatcgAAGCACGAGGAAGAAGCCATCCTTTTTCTACAAGTCAGCAT
CCCAACAAGTCAAGGTCTGCAGCTCCACTTAGCATATTTTGATATCTACA
ACAAATCTAAAGATGTTTTCTCCAACTACACCAAGGAAAAGACCAAGata
taataataacaacaaagTTCCAACCGGTATGCATGTAATCTTTCAAATAT
CATTCAAGCTTTTACATATAGACTATAGAGGGTAAAATGACCAGGCAGGT
TAACGAATGAGAATGTCCATTTTAACTCAAATCTCTTCCTCCTCCTTGGA
AACATTTTCAGGTGGGGATTCGAAGGTTTTTAGAAATTTAGATGGAATTT
ACTGAATACTGTAAGGTGAGCAGGGCTACTACATATGAAAAACTTACCAT
TTTTGGTCAGACAAAAAGCTATCTTCTTTCAGCACTTTTATCAAGGAAAa
cgagtgtatttttaagcaaatgTCTGGGAAAATTGTTCTGGGGAACTGCT
GGGAACCCTGCATCAAGTAATCTCAGGTATGGGTGGTGAAAGTGACTTTA
TCTCAGGTGGGCTGAAGTGGAGGGGTGTTGAACACTATGGATAATTTTGT
TTGACATCATATGACCGGCCATCCTATAAATACTATTACCCCCGTTTTCC
TTTGAAAGTAAATGTCATGGATGAAAGTGTGAATGCAGACAGATCTTAGA
TGTAAAAAATGTGTGgttaaaaataaaagacaattgttttttgttttcta
atTATAGCCATAACTGGCTACACTTGATTGGGGTTACTCTCACGAGTAAG
GGGTAACTTTCATCTAGTCCAAACAGGAGACTGTTCTGGTATGCGATTTT
TGAATTCAGCTAGAATGTAAAGAAGTCATGTCATGACTTTCAGCTATTAT
AAATTGAGGATCAGAAAATATTATTGTCTGCAGGTAATGAAAGTTACCCT
TAATTCCATTTCTGAGATGTCCTTAAATTCAATCCTAACTGATTTTGTCT
TCAGATTACTGATTACTGTACATGAAGCTAATGTCTTtctcttttttgtt
attttagaaACTGTTGATATGGTTGGGTATATCACTTGGGTTAAtccaaa
aatttccaaatctgaGAAATCCTCATTTTTTGACCTATACCTTGGGCTAG
AAGAATCAGAGGTCCGAATTGTATCATTCAATACCGACATTCATTCCCAG
TTGATGAAACGGATGAAAAAAggtatcatttttttcaaactttccaaGTC
TAATGCAGACTGGATATACAGTGACACTCATCACTCGTCTTTTAATGATA
AGGACCCGCCATTTGTATTTGTCAACCAATACAATGTTGTCAGCACGCCT
TTGAAAGAAGCAATCGAGGAAAAGCCACTCTACTCGAGAGTATCAATGGA
TATCAAAGTCATCCAAATCAAGGATGAAGGAATATCGAAGGAGGGGTTGC
CTTTTCAATCAGTTAGAATCATTGATAATTCCATTAAGGAACCTAGAATG
TTAACTTTGTTTGACAAACTTGTTACCAAAGTAGCTGTACAGTCATCCTA
CACATTGTCATATGTCTCAATTCAATTATTTGGTGGTCAAAGAGTATTCA
AAACGACTGAAAGATCAACCATAACTACCATGAAGAAAGACACAATCAAA
TGCCCAAAGCAAGATGCTGCTGAAGAATTGATTGGTACAGTCATTACTGT
AAACTTGAAATCAGTTGAAGCCAAGCTCTGTTGCCCGCAGTGTGAAAACC
CAGTGAATTCCTCTGGCGGAATTTCCATTTTCTGTCATTTCTGTTCTGAA
GCGGTGTCCCGATCTAGATTGTTGAAAATGGGTGTATTGCAATTCAAAGT
TCTCGAGGACAATTGCAGACTCCCTCGAGCTTGAACattgagaaattttt
gaatttctcatTATCTGACACTGATAGATTTTTCTCGATGTTCATGGATT
CCAAGCTTGTTATCAAGCACCTCAAAGGTGAGGTTATTTTATTAAAACAC
TTTGAAAAAGACCAAAATTCAACATCAGCTCCCACTGGTGGAAACTCTAA
GAAAACTTAGAGCTTTGTTAACATTTTTTTAGTATCAACGGATCTTatat
tttgttagttttttaacTGTTGTACATGTTAATATTTGTTCCCATTTGAA
CattgagaaatttttgaatttctcgtTATCTGACACTGATAGATTTTTCT
CGATGTTCATGGATTCCAAGCTCGTTATCAAACACCTCAAAGGTGAGGTT
ATTTTGTAAAAACACTTTGAAAAAGACCAAAATTCAACATCAGCTCCCGC
TGGTGGAAACTCTAAGAAAACTTAGAGCtttattaacatttttttaGTAT
CAACGGATCTTgtattttgttagttttttaacTGTTGTACATGTTAATAT
TTTATTATAACGAAAGTTCTTTCCTTTGTAATTTTAAAGTTCTTGAGGAC
AATTGCCGACTTCCTCGTTCACTGGAGTGTtcccatttgaaaattttgaa
tttcaagttatCTGATACTGACGGATTGTTTGCATGTTTATTGATTTTAA
GCTCATTATCAAACACCTCAAAGGTGAGGTTATTTCAATAAAACGTTTCG
AAAAGGACTAACCTGCATCATCTGGTACAAACTCTTTAAGAGCTTTATTA
CCATTTTTAAATTTAGTCTCAACTGATCCTACATTTTGTTAAGAtttctt
tttaagtgttttaaagttttctttccTTTGCATCACAAGGTTTAAACCGA
TTATAAATGTATTTACAGACTTTACAAAGTTAGCATTACTTACATTTTAA
GAGTTGTCCCAAACTCCTAACAGAACTGATGTCTGTTCTGTAATCCTGTA
GGTTTGATTTTTCTCGTGTAATTTTACtaagtttttccatttttgacaTT
GTGTAcattaacttatttttaaagcCTTATTTTAACAAACATTtgcattt
ttagcaaaaaaatttttttttttttttttgacatttaatgtcaacttctt
ttgaaattaatatattttaCTACGTTTTACATATTTAGCAAAAATGTTTC
GTTTTTTTGAAACATCATGTaaacttcttttgaaatttgttgcattttta
aaaagtaataatgCATTCAATGCTTTTCTCTCAAATTTCCCTCTTTTTTG
TC Coding sequence (CDS) from alignment at sc0004301:3658..6859+ >TCONS_00043507 ID=TCONS_00043507|Name=TCONS_00043507|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0004301:3658..6859+ (Clytia hemisphaerica)
ATGTTTTCTCCAACTACACCAAGGAAAAGACCAAGatataataataacaa
caaagTTCCAACCGaaACTGTTGATATGGTTGGGTATATCACTTGGGTTA
AtccaaaaatttccaaatctgaGAAATCCTCATTTTTTGACCTATACCTT
GGGCTAGAAGAATCAGAGGTCCGAATTGTATCATTCAATACCGACATTCA
TTCCCAGTTGATGAAACGGATGAAAAAAggtatcatttttttcaaacttt
ccaaGTCTAATGCAGACTGGATATACAGTGACACTCATCACTCGTCTTTT
AATGATAAGGACCCGCCATTTGTATTTGTCAACCAATACAATGTTGTCAG
CACGCCTTTGAAAGAAGCAATCGAGGAAAAGCCACTCTACTCGAGAGTAT
CAATGGATATCAAAGTCATCCAAATCAAGGATGAAGGAATATCGAAGGAG
GGGTTGCCTTTTCAATCAGTTAGAATCATTGATAATTCCATTAAGGAACC
TAGAATGTTAACTTTGTTTGACAAACTTGTTACCAAAGTAGCTGTACAGT
CATCCTACACATTGTCATATGTCTCAATTCAATTATTTGGTGGTCAAAGA
GTATTCAAAACGACTGAAAGATCAACCATAACTACCATGAAGAAAGACAC
AATCAAATGCCCAAAGCAAGATGCTGCTGAAGAATTGATTGGTACAGTCA
TTACTGTAAACTTGAAATCAGTTGAAGCCAAGCTCTGTTGCCCGCAGTGT
GAAAACCCAGTGAATTCCTCTGGCGGAATTTCCATTTTCTGTCATTTCTG
TTCTGAAGCGGTGTCCCGATCTAGATTGTTGAAAATGGGTGTATTGCAAT
TCAAAGTTCTCGAGGACAATTGCAGACTCCCTCGAGCTTGAATGTTTTCT
CCAACTACACCAAGGAAAAGACCAAGatataataataacaacaaagTTCC
AACCGaaACTGTTGATATGGTTGGGTATATCACTTGGGTTAAtccaaaaa
tttccaaatctgaGAAATCCTCATTTTTTGACCTATACCTTGGGCTAGAA
GAATCAGAGGTCCGAATTGTATCATTCAATACCGACATTCATTCCCAGTT
GATGAAACGGATGAAAAAAggtatcatttttttcaaactttccaaGTCTA
ATGCAGACTGGATATACAGTGACACTCATCACTCGTCTTTTAATGATAAG
GACCCGCCATTTGTATTTGTCAACCAATACAATGTTGTCAGCACGCCTTT
GAAAGAAGCAATCGAGGAAAAGCCACTCTACTCGAGAGTATCAATGGATA
TCAAAGTCATCCAAATCAAGGATGAAGGAATATCGAAGGAGGGGTTGCCT
TTTCAATCAGTTAGAATCATTGATAATTCCATTAAGGAACCTAGAATGTT
AACTTTGTTTGACAAACTTGTTACCAAAGTAGCTGTACAGTCATCCTACA
CATTGTCATATGTCTCAATTCAATTATTTGGTGGTCAAAGAGTATTCAAA
ACGACTGAAAGATCAACCATAACTACCATGAAGAAAGACACAATCAAATG
CCCAAAGCAAGATGCTGCTGAAGAATTGATTGGTACAGTCATTACTGTAA
ACTTGAAATCAGTTGAAGCCAAGCTCTGTTGCCCGCAGTGTGAAAACCCA
GTGAATTCCTCTGGCGGAATTTCCATTTTCTGTCATTTCTGTTCTGAAGC
GGTGTCCCGATCTAGATTGTTGAAAATGGGTGTATTGCAATTCAAAGTTC
TCGAGGACAATTGCAGACTCCCTCGAGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043507-exon-sc0004301-1491911889:3658..3883 | TCONS_00043507-exon-sc0004301-1491911889:3658..3883 | Clytia hemisphaerica | exon |
| TCONS_00043507-exon-sc0004301-1510915933:3658..3883 | TCONS_00043507-exon-sc0004301-1510915933:3658..3883 | Clytia hemisphaerica | exon |
| TCONS_00043507-exon-sc0004301-1575043694:3658..3883 | TCONS_00043507-exon-sc0004301-1575043694:3658..3883 | Clytia hemisphaerica | exon |
| TCONS_00043507-exon-sc0004301-1491911889:4765..6859 | TCONS_00043507-exon-sc0004301-1491911889:4765..6859 | Clytia hemisphaerica | exon |
| TCONS_00043507-exon-sc0004301-1510915933:4765..6859 | TCONS_00043507-exon-sc0004301-1510915933:4765..6859 | Clytia hemisphaerica | exon |
| TCONS_00043507-exon-sc0004301-1575043694:4765..6859 | TCONS_00043507-exon-sc0004301-1575043694:4765..6859 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004301 | supercontig | sc0004301:3658..6859 + |
Blast
The following BLAST results are available for this feature:
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