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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043508 ID=TCONS_00043508|Name=TCONS_00043508|organism=Clytia hemisphaerica|type=transcript|length=891bp
TTTAGCATTCAGATCACCAACAATGATAGAATTTGGTGGAAAGAGAAATT
TAACAACATCTAGATCTACAGTGAAACTAGGAGGAAAATAACAACAATAG
AGGTTGAAAAAACGTTTCATGTTTCTTGAGTCTGGAAAAATACTGACAGA
AATAATTTCATGTTTACCTATCTGGAATTTTTTGTCATAATCAAAAGcaa
tgtcattttttatcaaaattgcagTACCCCCACCATATGATTTTAAAGTA
CGTCTGTCTATCCTATTATTCATGATAGGAATATAATTTGGAATGGTAAT
GGTTTCTTTCTTAATGAGTTTTGTCTCATTGAGACATACTAAGTCTGGTT
TTTGTTCAGTAATGAGGGTTAAAAGATCTTGTTTCTTAGATTTGTATCCA
TTAAGGTTTAgttgcaaaattttcaaagtcatgGTAAAGAAGTGTTACAT
TCAGGTGGATTTTGTGCACAGATTAGAGAGGTTTCTTGAAGGTTGGTAAA
CTTGTCTGTAAATCCTATTTTATCAATAGGTCCTAGATGTCTAGAGGAAA
TGCTAAGAAGCTGGAAACAAATGTTCATGAAGTCAGACATATGACCCTGT
TCCATAGCATAGAGACATTCGAAAAGAATAAGAATAAGAGAATTGTTAGA
GAcatgatttttggaaaaagaagatAACTCAGAGGAAAGTTCTTCAGATA
ATTCTGTTTTGGATACAAAAGATTCTTTAATTACATTTACAGAGGATTCT
AGTTTATCAATTCTAGGAGTAAGATTTTTAAGGTGAGTTTCTAAGTTTAC
AAAGTTTTGCGTGTTGGGTTTTATTATTCTCAACAATCTTACAAAGATTA
GAATTTATTTCAGACAATttattatcaacattttcaatgta Run BLAST on NCBI protein sequence of TCONS_00043508-protein >TCONS_00043508-protein ID=TCONS_00043508-protein|Name=TCONS_00043508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MTLKILQLNLNGYKSKKQDLLTLITEQKPDLVCLNETKLIKKETITIPNY
IPIMNNRIDRRTLKSYGGGTAILIKNDIAFDYDKKFQIGKHEIISVSIFP
DSRNMKRFFNLYCCYFPPSFTVDLDVVKFLFPPNSIIVGDLNAK Run BLAST on NCBI transcript from alignment at sc0004302:2..892 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043508 ID=TCONS_00043508|Name=TCONS_00043508|organism=Clytia hemisphaerica|type=transcript|length=891bp|location=Sequence derived from alignment at sc0004302:2..892 (Clytia hemisphaerica)
tacattgaaaatgttgataataaATTGTCTGAAATAAATTCTAATCTTTG
TAAGATTGTTGAGAATAATAAAACCCAACACGCAAAACTTTGTAAACTTA
GAAACTCACCTTAAAAATCTTACTCCTAGAATTGATAAACTAGAATCCTC
TGTAAATGTAATTAAAGAATCTTTTGTATCCAAAACAGAATTATCTGAAG
AACTTTCCTCTGAGTTatcttctttttccaaaaatcatgTCTCTAACAAT
TCTCTTATTCTTATTCTTTTCGAATGTCTCTATGCTATGGAACAGGGTCA
TATGTCTGACTTCATGAACATTTGTTTCCAGCTTCTTAGCATTTCCTCTA
GACATCTAGGACCTATTGATAAAATAGGATTTACAGACAAGTTTACCAAC
CTTCAAGAAACCTCTCTAATCTGTGCACAAAATCCACCTGAATGTAACAC
TTCTTTACcatgactttgaaaattttgcaacTAAACCTTAATGGATACAA
ATCTAAGAAACAAGATCTTTTAACCCTCATTACTGAACAAAAACCAGACT
TAGTATGTCTCAATGAGACAAAACTCATTAAGAAAGAAACCATTACCATT
CCAAATTATATTCCTATCATGAATAATAGGATAGACAGACGTACTTTAAA
ATCATATGGTGGGGGTActgcaattttgataaaaaatgacattgCTTTTG
ATTATGACAAAAAATTCCAGATAGGTAAACATGAAATTATTTCTGTCAGT
ATTTTTCCAGACTCAAGAAACATGAAACGTTTTTTCAACCTCTATTGTTG
TTATTTTCCTCCTAGTTTCACTGTAGATCTAGATGTTGTTAAATTTCTCT
TTCCACCAAATTCTATCATTGTTGGTGATCTGAATGCTAAA Coding sequence (CDS) from alignment at sc0004302:2..892 >TCONS_00043508 ID=TCONS_00043508|Name=TCONS_00043508|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0004302:2..892 (Clytia hemisphaerica)
atgactttgaaaattttgcaacTAAACCTTAATGGATACAAATCTAAGAA
ACAAGATCTTTTAACCCTCATTACTGAACAAAAACCAGACTTAGTATGTC
TCAATGAGACAAAACTCATTAAGAAAGAAACCATTACCATTCCAAATTAT
ATTCCTATCATGAATAATAGGATAGACAGACGTACTTTAAAATCATATGG
TGGGGGTActgcaattttgataaaaaatgacattgCTTTTGATTATGACA
AAAAATTCCAGATAGGTAAACATGAAATTATTTCTGTCAGTATTTTTCCA
GACTCAAGAAACATGAAACGTTTTTTCAACCTCTATTGTTGTTATTTTCC
TCCTAGTTTCACTGTAGATCTAGATGTTGTTAAATTTCTCTTTCCACCAA
ATTCTATCATTGTTGGTGATCTGAATGCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043508-exon-sc0004302-1491911889:2..892 | TCONS_00043508-exon-sc0004302-1491911889:2..892 | Clytia hemisphaerica | exon |
| TCONS_00043508-exon-sc0004302-1510915933:2..892 | TCONS_00043508-exon-sc0004302-1510915933:2..892 | Clytia hemisphaerica | exon |
| TCONS_00043508-exon-sc0004302-1575043694:2..892 | TCONS_00043508-exon-sc0004302-1575043694:2..892 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004302 | supercontig | sc0004302:2..892 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005135 | Endo/exonuclease/phosphatase |
Blast
The following BLAST results are available for this feature:
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