TCONS_00043511 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043511
Unique NameTCONS_00043511
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043511 ID=TCONS_00043511|Name=TCONS_00043511|organism=Clytia hemisphaerica|type=transcript|length=880bp
GCAAGGTCTTGTCCTGACGAGAACTATTGTCTGCTAGCTGCAGCGTAATT
CGACGAAGCATCTCGTCGGATGCAGGCTCTTCATCGAACGACATTAGTAC
TGAAGACGAATGTCTAGTTTTGGCGCCTCTATTAAAATTTTCCTGGGTCT
CAAACGAATGAACAGGACAGCGCCCAGGGGCTGAACTGTTGCGCGTAGCG
GTCCTACAACTACACTTAAGGCTGTTATTCGCTTGAATCTTGGCGGTTAA
TTAGTttctatataaaaaaatttgtttcgTTTCAATCAATTATAGTAAAT
TAGTTTTCTCTACCGGAAATAGTTTTCTCAATGACGTATCTATCAGCGAA
ATAATTGCCTAACGAAAGAACAACTTAATTGCTTCTTACTTATATACAAG
GATTATATGTTGAGCTATATATATACACGCGCGCTAAAtgaattcaaata
aaaacaaaaatatactcACGACGTAAGCGTCCTTACGTTTACTTTGACGG
CTGGGTTCACAACAGTGTCGCTGAGTCTGGAGCGTCCAATGCACGTCTTT
TGTCGACAATTCTTCTTTTGTaacttcttcttcttttgtaACTTCTTCTT
CTTAATTTCTTCTTCGTAATTTATAATAACCTCTTTAACATCAATacact
aattttcttctttgtaATTTACCTCTTTAACATCGATACAACATCGATAC
ACTAATATTAAATTTGATAGCcctatttcatttttcttaaaacTAAACGC
TGTCTGCGGGTATTTTCATCGGGACGTCATATGTAGACTGGGCTAACAAA
GGGGGAGACGGCTCAGCGGAGAGATCAGTAATTTAAGACTGTATATGGTT
TCGTACCATCGATTAACTTATATTCTCAAT
Run BLAST on NCBI

transcript from alignment at sc0004305:6605..7484

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043511 ID=TCONS_00043511|Name=TCONS_00043511|organism=Clytia hemisphaerica|type=transcript|length=880bp|location=Sequence derived from alignment at sc0004305:6605..7484 (Clytia hemisphaerica)
ATTGAGAATATAAGTTAATCGATGGTACGAAACCATATACAGTCTTAAAT
TACTGATCTCTCCGCTGAGCCGTCTCCCCCTTTGTTAGCCCAGTCTACAT
ATGACGTCCCGATGAAAATACCCGCAGACAGCGTTTAgttttaagaaaaa
tgaaataggGCTATCAAATTTAATATTAGTGTATCGATGTTGTATCGATG
TTAAAGAGGTAAATtacaaagaagaaaattagtgtATTGATGTTAAAGAG
GTTATTATAAATTACGAAGAAGAAATTAAGAAGAAGAAGTtacaaaagaa
gaagaagttACAAAAGAAGAATTGTCGACAAAAGACGTGCATTGGACGCT
CCAGACTCAGCGACACTGTTGTGAACCCAGCCGTCAAAGTAAACGTAAGG
ACGCTTACGTCGTgagtatatttttgtttttatttgaattcaTTTAGCGC
GCGTGTATATATATAGCTCAACATATAATCCTTGTATATAAGTAAGAAGC
AATTAAGTTGTTCTTTCGTTAGGCAATTATTTCGCTGATAGATACGTCAT
TGAGAAAACTATTTCCGGTAGAGAAAACTAATTTACTATAATTGATTGAA
AcgaaacaaatttttttatatagaaACTAATTAACCGCCAAGATTCAAGC
GAATAACAGCCTTAAGTGTAGTTGTAGGACCGCTACGCGCAACAGTTCAG
CCCCTGGGCGCTGTCCTGTTCATTCGTTTGAGACCCAGGAAAATTTTAAT
AGAGGCGCCAAAACTAGACATTCGTCTTCAGTACTAATGTCGTTCGATGA
AGAGCCTGCATCCGACGAGATGCTTCGTCGAATTACGCTGCAGCTAGCAG
ACAATAGTTCTCGTCAGGACAAGACCTTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027201XLOC_027201Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043511-exon-sc0004305-1491911889:6605..7484TCONS_00043511-exon-sc0004305-1491911889:6605..7484Clytia hemisphaericaexon
TCONS_00043511-exon-sc0004305-1510915933:6605..7484TCONS_00043511-exon-sc0004305-1510915933:6605..7484Clytia hemisphaericaexon
TCONS_00043511-exon-sc0004305-1575043694:6605..7484TCONS_00043511-exon-sc0004305-1575043694:6605..7484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004305supercontigsc0004305:6605..7484 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0686912	0.103119	0.179596	0.117138	1.73368	0.753603	1.22086	2.1315	0.316434	0.710811	0.283073	0.626115	1.50728	1.73842	0.688164	0.263337	0.0978902	0.356298	0.579562	0.397483	0.399963	0.700015	0.0803784	0.18533	0.842742	1.36791	0.387969	0.158527	0.350387	0.557289
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043511 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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