TCONS_00043516 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043516
Unique NameTCONS_00043516
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043516 ID=TCONS_00043516|Name=TCONS_00043516|organism=Clytia hemisphaerica|type=transcript|length=563bp
attttgagcctcactgttcttgtaaaattgttctttaaaaaaaaagtgta
gccGAGATGTGGTttgaaaaaaacacaaagaatttgAGACTGTTTGAGAG
AACCAAAACTTGAAATAAcctgaaatgtaaaaatttctgattttttagaT
GACAAATACAATATACCTTAAACTTCAGTAACTGTATCGGTACTTTGCGC
CTTACTTTGGCTTCAAATGTCATTTCGACCAAAACGAGAAAATTGGTCAA
AGATACGGATGCACGATTGCAATGATTGATGGTGATGATGATGTTCTCGT
TTTATAACAGGCTACGCTCAGTACGCTTCAATGCCGTTAAAAAACCCAAT
ACTAATTTACGAATTTATTTTTAGACCAGCTATGTTAACTTATGGTGTAT
GGGAACAAGTGCGTATGGACCATGGTCAAGAATTCTGTCTTGTCAGTTTC
GCTCAAACTATTATGTCACACCATAGGCTTGTTGGTACTTCTGAACCTTT
TCGCATGACAACTTCGACGAAAAACAACGTTATTGAACGCTTTTGGCCCG
AGATGAATACGCG
Run BLAST on NCBI

transcript from alignment at sc0004308:6279..6841

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043516 ID=TCONS_00043516|Name=TCONS_00043516|organism=Clytia hemisphaerica|type=transcript|length=563bp|location=Sequence derived from alignment at sc0004308:6279..6841 (Clytia hemisphaerica)
CGCGTATTCATCTCGGGCCAAAAGCGTTCAATAACGTTGTTTTTCGTCGA
AGTTGTCATGCGAAAAGGTTCAGAAGTACCAACAAGCCTATGGTGTGACA
TAATAGTTTGAGCGAAACTGACAAGACAGAATTCTTGACCATGGTCCATA
CGCACTTGTTCCCATACACCATAAGTTAACATAGCTGGTCTAAAAATAAA
TTCGTAAATTAGTATTGGGTTTTTTAACGGCATTGAAGCGTACTGAGCGT
AGCCTGTTATAAAACGAGAACATCATCATCACCATCAATCATTGCAATCG
TGCATCCGTATCTTTGACCAATTTTCTCGTTTTGGTCGAAATGACATTTG
AAGCCAAAGTAAGGCGCAAAGTACCGATACAGTTACTGAAGTTTAAGGTA
TATTGTATTTGTCAtctaaaaaatcagaaatttttacatttcaggTTATT
TCAAGTTTTGGTTCTCTCAAACAGTCTcaaattctttgtgtttttttcaa
ACCACATCTCggctacactttttttttaaagaacaattttacaagaacag
tgaggctcaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027206XLOC_027206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043516-exon-sc0004308-1491911889:6279..6841TCONS_00043516-exon-sc0004308-1491911889:6279..6841Clytia hemisphaericaexon
TCONS_00043516-exon-sc0004308-1510915933:6279..6841TCONS_00043516-exon-sc0004308-1510915933:6279..6841Clytia hemisphaericaexon
TCONS_00043516-exon-sc0004308-1575043694:6279..6841TCONS_00043516-exon-sc0004308-1575043694:6279..6841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004308supercontigsc0004308:6279..6841 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.386009	0.411231	0.617529	0.268919	4.12849	3.14438	0.433264	0.887251	0.163047	0.858618	0.101536	0.0972985	0.403873	0	0.296057	0.315469	0.990818	0.655476	0.447257	0	1.17565	0.597152	0	0.424449	0.916135	0.980345	0	0	0.97565	0.962464
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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