TCONS_00043546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043546
Unique NameTCONS_00043546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length758

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043546 ID=TCONS_00043546|Name=TCONS_00043546|organism=Clytia hemisphaerica|type=transcript|length=758bp
tTAATATTTACAAGGATACTCAGTATCTACTTtgtttattttatctattt
tgcttTGGTTCCGTATTttattccataatggcagattagCTGCGCGGAAC
ATTCtagttctaataaaaaagcaCAATTTCTAGCATAGATGTTAATGTCT
CAAGTTTCTGTCTAAATCCACCTCCATCGACTATGAATTCAACAGGTTAT
GGGCCCAGTGCCAACACACACTGGAAAAACATTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTAAACTAATTGACGCCAACTGGGCAGAGAGCACAGCTA
GAAAGTATTCGTATGGATGGAATGCGTGGGTAAAGTGGAGTGACCAATAT
GATGAAGTTATAGCCATACCAGCAGACCCTTTTCACGTCTGTTTGTACCT
GAACGACCTATCAAGAGAGAAAAAACAACCAGGAACAATTACTAACGCTT
TGACAGGGATTAGATGGGGTCATTTGAGAAAAGGATATCAATCCCCTACT
GATGATTGTCTTGTAGCGTAGAATTAACTTTCAAAGGAGCATTACGTTTA
GCCTCAGAGCATAGAGTTTCAAACCAAAAAGAGCCATTGTCGCCTGAACT
AGTGAAAAAGGTCTGTGAGAGGTACGGGCAAAGTGACAACCTTTTGCACA
CACGTTttcttttaaacgttttaatTGGGTATTTCGGTTTTCTTCGCATA
GTCTTAGttggccttaattttagtcggccctaattttagtcacctcgtca
aaatttag
Run BLAST on NCBI

protein sequence of TCONS_00043546-protein

>TCONS_00043546-protein ID=TCONS_00043546-protein|Name=TCONS_00043546-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MNSTGYGPSANTHWKNIXXXXXXXXXXKLIDANWAESTARKYSYGWNAWV
KWSDQYDEVIAIPADPFHVCLYLNDLSREKKQPGTITNALTGIRWGHLRK
GYQSPTDDCLVA
Run BLAST on NCBI

transcript from alignment at sc0004336:591..1348

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043546 ID=TCONS_00043546|Name=TCONS_00043546|organism=Clytia hemisphaerica|type=transcript|length=758bp|location=Sequence derived from alignment at sc0004336:591..1348 (Clytia hemisphaerica)
ctaaattttgacgaggtgactaaaattagggccgactaaaattaaggcca
aCTAAGACTATGCGAAGAAAACCGAAATACCCAattaaaacgtttaaaag
aaAACGTGTGTGCAAAAGGTTGTCACTTTGCCCGTACCTCTCACAGACCT
TTTTCACTAGTTCAGGCGACAATGGCTCTTTTTGGTTTGAAACTCTATGC
TCTGAGGCTAAACGTAATGCTCCTTTGAAAGTTAATTCTACGCTACAAGA
CAATCATCAGTAGGGGATTGATATCCTTTTCTCAAATGACCCCATCTAAT
CCCTGTCAAAGCGTTAGTAATTGTTCCTGGTTGTTTTTTCTCTCTTGATA
GGTCGTTCAGGTACAAACAGACGTGAAAAGGGTCTGCTGGTATGGCTATA
ACTTCATCATATTGGTCACTCCACTTTACCCACGCATTCCATCCATACGA
ATACTTTCTAGCTGTGCTCTCTGCCCAGTTGGCGTCAATTAGTTTANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTTTCCAGTGTGTGTTGGCA
CTGGGCCCATAACCTGTTGAATTCATAGTCGATGGAGGTGGATTTAGACA
GAAACTTGAGACATTAACATCTATGCTAGAAATTGtgcttttttattaga
actaGAATGTTCCGCGCAGctaatctgccattatggaataaAATACGGAA
CCAaagcaaaatagataaaataaacaAAGTAGATACTGAGTATCCTTGTA
AATATTAa

Coding sequence (CDS) from alignment at sc0004336:591..1348

>TCONS_00043546 ID=TCONS_00043546|Name=TCONS_00043546|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0004336:591..1348 (Clytia hemisphaerica)
CTACGCTACAAGACAATCATCAGTAGGGGATTGATATCCTTTTCTCAAAT
GACCCCATCTAATCCCTGTCAAAGCGTTAGTAATTGTTCCTGGTTGTTTT
TTCTCTCTTGATAGGTCGTTCAGGTACAAACAGACGTGAAAAGGGTCTGC
TGGTATGGCTATAACTTCATCATATTGGTCACTCCACTTTACCCACGCAT
TCCATCCATACGAATACTTTCTAGCTGTGCTCTCTGCCCAGTTGGCGTCA
ATTAGTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTTTTCCA
GTGTGTGTTGGCACTGGGCCCATAACCTGTTGAATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027233XLOC_027233Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043546-proteinTCONS_00043546-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043546-exon-sc0004336-1491911889:591..1348TCONS_00043546-exon-sc0004336-1491911889:591..1348Clytia hemisphaericaexon
TCONS_00043546-exon-sc0004336-1510915933:591..1348TCONS_00043546-exon-sc0004336-1510915933:591..1348Clytia hemisphaericaexon
TCONS_00043546-exon-sc0004336-1575043694:591..1348TCONS_00043546-exon-sc0004336-1575043694:591..1348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004336supercontigsc0004336:591..1348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.76227	3.65881	2.14614	0.905971	1.04661	0.854919	0.467213	0.710462	0.544178	0.662795	1.27848	0.80439	0.60342	0.710795	1.01165	0.72383	0.556972	0.435689	0.618256	0.45286	0.41035	0.678243	1.29824	1.24373	0.142149	0.450308	0.751641	0.88941	1.45826	0.733444
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023109Integrase_recombinase_N
IPR010998Integrase_Lambda-type_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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