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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043558 ID=TCONS_00043558|Name=TCONS_00043558|organism=Clytia hemisphaerica|type=transcript|length=1173bp
AATGGTAATGGCGACAATGGCGAAAACATAACCGTCGTATTTCGGTAACG
ATCTATTTTCTTTCATAACCAGGTATCATAGGTTCTTTAATTAAttattg
aaaacattttaatggTCGTTCATCATGATTTTTCGACCTTATATAGCGAA
TGTCATCATCAGAgtgaagaaaaattaaaaattacaaattctaacgtcaa
aatatttttacgtCAGATTACAAATGCAATGAATTCTCCCTAAGATAAGA
GAGCATTGGCTTCCAGAATGCCGTCGTCACGTACTGACCATCGTCTTGAT
TAAGACCATGTTCATTACGTGGCGAAGTTGCCCGGAACTGAATCTCCAAT
GCTTCTCTTACCTTTCGGTCGAATTTCCTATCCTCGATTTTTAAAGTTGA
AACCCAGTCGAATTCTTCCTTGCAAGTTTTTGCGTGGAAAGAAACTCCAG
AAATATCCCATTTTTCGTCTCTAATAGTTTTCTCATGTTGTTGAATTCGA
GTAGACACTTTTAACTTTGTTTCACCGACATATCGTTTTTCGCATTTGCA
GCTCACCATGTTCACTGTTCTTTGGTAAACGACTTTTGTTGCTAGATGTT
AATAGAGTTTTCAAATCGGATGAGCTTTTGAACACAGCTTTGTATCCGTG
TTTCCTGTAACTTTCTGAATTTGGGACTCAGTCCTAGAACCCACGGAAGC
GTGATGATCTTGTTCGGTTCGTTATCCTCTTCAACAGTAGGTCGATTTTC
TTCGACTCTTTTCTTCAAACAATCGAACAATCTCATCCAACTGGTCTTTG
TCGTATCCGTTATCGGTGAAGCATGATACCAAGAACTCGATCTCGTCTTT
TCGGTGCTGTCCCTTGCAGACAGTGTATGCTATTTGCAAGAAACCTGTGG
TTCCTTAGGTTCTTTTCTGCTTTCTCTGTCACGAGTAACAAGTAAGCTGT
TATATTTTTGGTCAGGATTTTGATGTAAGAAGCATCAAGGCTTCAACTGA
TATAAATTCATTCCAATAATATTGGCCGATGGCGATTGCTTTCAAAACAT
GAATCTTCgagttttcttgattttacatggaaaacatttgaaagaataaa
tGTACAAATAAAgaattgatgaatttttgattgATGGTATTCGATCCGAC
GGAACCCCATTGGTGTCATTGAC Run BLAST on NCBI protein sequence of TCONS_00043558-protein >TCONS_00043558-protein ID=TCONS_00043558-protein|Name=TCONS_00043558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MVSCKCEKRYVGETKLKVSTRIQQHEKTIRDEKWDISGVSFHAKTCKEEF
DWVSTLKIEDRKFDRKVREALEIQFRATSPRNEHGLNQDDGQYVTTAFWK
PMLSYLRENSLHL Run BLAST on NCBI transcript from alignment at sc0004344:5934..7106 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043558 ID=TCONS_00043558|Name=TCONS_00043558|organism=Clytia hemisphaerica|type=transcript|length=1173bp|location=Sequence derived from alignment at sc0004344:5934..7106 (Clytia hemisphaerica)
GTCAATGACACCAATGGGGTTCCGTCGGATCGAATACCATcaatcaaaaa
ttcatcaattcTTTATTTGTACatttattctttcaaatgttttccatgta
aaatcaagaaaactcGAAGATTCATGTTTTGAAAGCAATCGCCATCGGCC
AATATTATTGGAATGAATTTATATCAGTTGAAGCCTTGATGCTTCTTACA
TCAAAATCCTGACCAAAAATATAACAGCTTACTTGTTACTCGTGACAGAG
AAAGCAGAAAAGAACCTAAGGAACCACAGGTTTCTTGCAAATAGCATACA
CTGTCTGCAAGGGACAGCACCGAAAAGACGAGATCGAGTTCTTGGTATCA
TGCTTCACCGATAACGGATACGACAAAGACCAGTTGGATGAGATTGTTCG
ATTGTTTGAAGAAAAGAGTCGAAGAAAATCGACCTACTGTTGAAGAGGAT
AACGAACCGAACAAGATCATCACGCTTCCGTGGGTTCTAGGACTGAGTCC
CAAATTCAGAAAGTTACAGGAAACACGGATACAAAGCTGTGTTCAAAAGC
TCATCCGATTTGAAAACTCTATTAACATCTAGCAACAAAAGTCGTTTACC
AAAGAACAGTGAACATGGTGAGCTGCAAATGCGAAAAACGATATGTCGGT
GAAACAAAGTTAAAAGTGTCTACTCGAATTCAACAACATGAGAAAACTAT
TAGAGACGAAAAATGGGATATTTCTGGAGTTTCTTTCCACGCAAAAACTT
GCAAGGAAGAATTCGACTGGGTTTCAACTTTAAAAATCGAGGATAGGAAA
TTCGACCGAAAGGTAAGAGAAGCATTGGAGATTCAGTTCCGGGCAACTTC
GCCACGTAATGAACATGGTCTTAATCAAGACGATGGTCAGTACGTGACGA
CGGCATTCTGGAAGCCAATGCTCTCTTATCTTAGGGAGAATTCATTGCAT
TTGTAATCTGacgtaaaaatattttgacgttagaatttgtaatttttaat
ttttcttcacTCTGATGATGACATTCGCTATATAAGGTCGAAAAATCATG
ATGAACGAccattaaaatgttttcaataaTTAATTAAAGAACCTATGATA
CCTGGTTATGAAAGAAAATAGATCGTTACCGAAATACGACGGTTATGTTT
TCGCCATTGTCGCCATTACCATT Coding sequence (CDS) from alignment at sc0004344:5934..7106 >TCONS_00043558 ID=TCONS_00043558|Name=TCONS_00043558|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0004344:5934..7106 (Clytia hemisphaerica)
ATGGTGAGCTGCAAATGCGAAAAACGATATGTCGGTGAAACAAAGTTAAA
AGTGTCTACTCGAATTCAACAACATGAGAAAACTATTAGAGACGAAAAAT
GGGATATTTCTGGAGTTTCTTTCCACGCAAAAACTTGCAAGGAAGAATTC
GACTGGGTTTCAACTTTAAAAATCGAGGATAGGAAATTCGACCGAAAGGT
AAGAGAAGCATTGGAGATTCAGTTCCGGGCAACTTCGCCACGTAATGAAC
ATGGTCTTAATCAAGACGATGGTCAGTACGTGACGACGGCATTCTGGAAG
CCAATGCTCTCTTATCTTAGGGAGAATTCATTGCATTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043558-exon-sc0004344-1491911889:5934..7106 | TCONS_00043558-exon-sc0004344-1491911889:5934..7106 | Clytia hemisphaerica | exon |
| TCONS_00043558-exon-sc0004344-1510915933:5934..7106 | TCONS_00043558-exon-sc0004344-1510915933:5934..7106 | Clytia hemisphaerica | exon |
| TCONS_00043558-exon-sc0004344-1575043694:5934..7106 | TCONS_00043558-exon-sc0004344-1575043694:5934..7106 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004344 | supercontig | sc0004344:5934..7106 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000305 | GIY-YIG_SF |
Blast
The following BLAST results are available for this feature:
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