TCONS_00043570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043570
Unique NameTCONS_00043570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043570 ID=TCONS_00043570|Name=TCONS_00043570|organism=Clytia hemisphaerica|type=transcript|length=353bp
AGCCCGCTTGTGGACTTTAGTGATTTCCTCATATGTAGTCTTGTTACAGA
ACATCCAAATGATCGGCGCGTAATTAAATATAGACATAACATAAGCATTA
AAAATTAATCTCCGTTGGTCAAATGTAAGAAGGTTTCGAATTCTGTCTAA
GCTCCAAATTCTCTTTTTAGTCTTAGAGCAAAGAGAATTGATATGAGTGC
TAAATGATAGATTATTGTCGATGGTGATGCCTAAGAGTTCAACAGAATCC
GTTGATGATATTTTTACATGTCCAACCGAAAGTTCTACAATAATATTTCT
ATTATTTCCTAATACCaacatttgaaattttccaggGTTTGCTTCAAGGT
AGT
Run BLAST on NCBI

protein sequence of TCONS_00043570-protein

>TCONS_00043570-protein ID=TCONS_00043570-protein|Name=TCONS_00043570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
YLEANPGKFQMLVLGNNRNIIVELSVGHVKISSTDSVELLGITIDNNLSF
STHINSLCSKTKKRIWSLDRIRNLLTFDQRRLIFNAYVMSIFNYAPIIWM
FCNKTTYEEITKVHKRA
Run BLAST on NCBI

transcript from alignment at sc0004352:11303..11655

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043570 ID=TCONS_00043570|Name=TCONS_00043570|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0004352:11303..11655 (Clytia hemisphaerica)
ACTACCTTGAAGCAAACcctggaaaatttcaaatgttGGTATTAGGAAAT
AATAGAAATATTATTGTAGAACTTTCGGTTGGACATGTAAAAATATCATC
AACGGATTCTGTTGAACTCTTAGGCATCACCATCGACAATAATCTATCAT
TTAGCACTCATATCAATTCTCTTTGCTCTAAGACTAAAAAGAGAATTTGG
AGCTTAGACAGAATTCGAAACCTTCTTACATTTGACCAACGGAGATTAAT
TTTTAATGCTTATGTTATGTCTATATTTAATTACGCGCCGATCATTTGGA
TGTTCTGTAACAAGACTACATATGAGGAAATCACTAAAGTCCACAAGCGG
GCT

Coding sequence (CDS) from alignment at sc0004352:11303..11655

>TCONS_00043570 ID=TCONS_00043570|Name=TCONS_00043570|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0004352:11303..11655 (Clytia hemisphaerica)
TACCTTGAAGCAAACcctggaaaatttcaaatgttGGTATTAGGAAATAA
TAGAAATATTATTGTAGAACTTTCGGTTGGACATGTAAAAATATCATCAA
CGGATTCTGTTGAACTCTTAGGCATCACCATCGACAATAATCTATCATTT
AGCACTCATATCAATTCTCTTTGCTCTAAGACTAAAAAGAGAATTTGGAG
CTTAGACAGAATTCGAAACCTTCTTACATTTGACCAACGGAGATTAATTT
TTAATGCTTATGTTATGTCTATATTTAATTACGCGCCGATCATTTGGATG
TTCTGTAACAAGACTACATATGAGGAAATCACTAAAGTCCACAAGCGGGC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027257XLOC_027257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043570-exon-sc0004352-1491911889:11303..11655TCONS_00043570-exon-sc0004352-1491911889:11303..11655Clytia hemisphaericaexon
TCONS_00043570-exon-sc0004352-1510915933:11303..11655TCONS_00043570-exon-sc0004352-1510915933:11303..11655Clytia hemisphaericaexon
TCONS_00043570-exon-sc0004352-1575043694:11303..11655TCONS_00043570-exon-sc0004352-1575043694:11303..11655Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043570-proteinTCONS_00043570-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004352supercontigsc0004352:11303..11655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.492746	1.0739	0.772398	0.76847	5.16626	3.15056	6.01828	5.63424	0.622841	0.576302	0	1.13181	2.42691	1.41513	1.65445	0.600531	0.202196	1.07152	0.912695	0	1.20294	3.98696	0.34649	0.868073	0.793559	2.36078	1.68546	1.08161	0	2.58847
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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