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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043583 ID=TCONS_00043583|Name=TCONS_00043583|organism=Clytia hemisphaerica|type=transcript|length=1917bp
TGATGCAAGAAATGGCAGCTCTAGCTAAAAAACATGATATCGAGGAACAC
CTTTATTATGGAGACACCCTCACTCACATTCAAAATCTTCTTGGTGATGG
CAGAACGACGCGATTCCTTTCAGAAATCTATGAAGATGACTTCACACCCA
GAGAAACTTGGACGAAAATGGTAACATTCCTTACGAAAGAACGTCGAATA
GCTGAACAAAAACTTATCCTTCGAGACGACTCATCAAAATCAAACGACAA
CAACAAACCAAAGGATTCATCAAAGAACACCAAGGATACGAGGTACGGAC
ATCCTAATTCTTATGTCTCTGATACCTCAAATCCTCTATGTGCTTTGTGT
GAAACACCTGCTGGAGTAGATCATCATGTTGCCACATCAGGCCCAGGCCA
GACGAGATTAATTCAATATTACACTTGTCAACTGTTTGCAGAAATGACAC
CTGCAAGTCGCCTCTCCCTTTTGAAATCAAAGGGGTACTGCTTTCAATGT
TTGTTTCCAGGTGCAGCCAGTGCATCTGGAAAACACAAGGATGGTAAATG
CCAACACGACTTCGTTTGTCCCGACGAATCACATCAAAAGTATTCAGTCC
GAAAACACGTCTTGGTTTGTGAGGAGCACAAGGAGGAGCCTGCCAATGTT
GAGttgctcgagaaattcaaagaGAGGTTCTTCAGAAATCCAAATCTTCC
AAGCTTTACGAAAAACATCAGTTTATCATTTCACACTGAATCGTTCCAAA
CCGTTGACGAAGATGGAGACAGAGGTATCTATATGCTCCAAGAAGTccaa
atcaatcaaaacaagctaCTCATTTTCTTTGATAATGGTTGTAGTGACTT
TGTTGTCAGCCAAAAAGCAATCAAGCTACTTGGATCAAATGCAATCAAAA
CGTCGTCAAAACCAGTCATTCTTGGTGGTGTTGGAAACAGTATTACAAAA
TCAACACTTGGTCGTTATATCGTCAAACTTCCACTGAGCAATGGAGAAAT
GACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGGTTTCGTTTAC
CGGACCCTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCA
TCGAAGCTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTC
AAACCATTACCGAAGCTTCCGCGCTCAATTGGTGGTGACGTTCATATGAT
GATTGGCGTCAAGCATCTGAAGTACTTCCCAAAACACGTTTATCAAATGC
CATCAGGACTGACAATACTCGAATCACTATTTACTAGTTCAAGCGGTGGA
AGAGGAGTAATCGCTGGTCCACACCCTTCCTTCAGTTGTCTCAATGTATC
TTCAAACTTCACATCAGTTTATCATAATACGATCCATCCAATCAAAACTC
CTTTACTCGGGTTCAATGCAGACAACCCAACATCTTTGAAATACTTCACT
CAAAATAAAGAggatcaatcgaaccaatcaatcAACaTCAACGATCAAAA
AGAACATCCAATCGACTCACCTATCAAAATTCAGTCGAAGACTCGATCGA
TCAAATCAACTCAGTCGCCCATTACTGATTCATCCAATCACATGAATATC
GCAATCAAAGTCGATCAAATACCTCACAAACTTAACATCAATGAGTCATC
AAATCAAAACGAGAAAAGTGGTATAAAAGCATCAGTTATGTCACAGATCC
CAAATTTCAACGAATCAAATCACATAATACCAAACGATCAAATTGTCAAG
TCTTTATCATCATCGCCAGAAACGTCCAACGAAATCACGTCAAACCTTAA
TCATGTCATTGGTTCTTTCATCCAAAAAAGGTCAAGTATCTCGAAAGCAT
TCAAACTCACGAATTCAACAGTCAGTCTATCTCAATCTGCAATCTGGATA
CCAATCATCAATCGTCT Run BLAST on NCBI protein sequence of TCONS_00043583-protein >TCONS_00043583-protein ID=TCONS_00043583-protein|Name=TCONS_00043583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MQEMAALAKKHDIEEHLYYGDTLTHIQNLLGDGRTTRFLSEIYEDDFTPR
ETWTKMVTFLTKERRIAEQKLILRDDSSKSNDNNKPKDSSKNTKDTRYGH
PNSYVSDTSNPLCALCETPAGVDHHVATSGPGQTRLIQYYTCQLFAEMTP
ASRLSLLKSKGYCFQCLFPGAASASGKHKDGKCQHDFVCPDESHQKYSVR
KHVLVCEEHKEEPANVELLEKFKERFFRNPNLPSFTKNISLSFHTESFQT
VDEDGDRGIYMLQEVQINQNKLLIFFDNGCSDFVVSQKAIKLLGSNAIKT
SSKPVILGGVGNSITKSTLGRYIVKLPLSNGEMXXXXXXXXXXXKWFRLP
DPASQKSHQHFQLFHSSKLTKTSTNRIQKLVDSNHYRSFRAQLVVTFI Run BLAST on NCBI transcript from alignment at sc0004365:2..1975- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043583 ID=TCONS_00043583|Name=TCONS_00043583|organism=Clytia hemisphaerica|type=transcript|length=1974bp|location=Sequence derived from alignment at sc0004365:2..1975- (Clytia hemisphaerica)
TGATGCAAGAAATGGCAGCTCTAGCTAAAAAACATGATATCGAGGAACAC
CTTTATTATGGAGACACCCTCACTCACATTCAAAATCTTCTTGGTGATGG
CAGAACGACGCGATTCCTTTCAGAAATCTATGAAGATGACTTCACACCCA
GAGAAACTTGGACGAAAATGGTAACATTCCTTACGAAAGAACGTCGAATA
GCTGAACAAAAACTTATCCTTCGAGACGACTCATCAAAATCAAACGACAA
CAACAAACCAAAGGATTCATCAAAGAACACCAAGGATACGAGGTACGGAC
ATCCTAATTCTTATGTCTCTGATACCTCAAATCCTCTATGTGCTTTGTGT
GAAACACCTGCTGGAGTAGATCATCATGTTGCCACATCAGGCCCAGGCCA
GACGAGATTAATTCAATATTACACTTGTCAACTGTTTGCAGAAATGACAC
CTGCAAGTCGCCTCTCCCTTTTGAAATCAAAGGGGTACTGCTTTCAATGT
TTGTTTCCAGGTGCAGCCAGTGCATCTGGAAAACACAAGGATGGTAAATG
CCAACACGACTTCGTTTGTCCCGACGAATCACATCAAAAGTATTCAGTCC
GAAAACACGTCTTGGTTTGTGAGGAGCACAAGGAGGAGCCTGCCAATGTT
GAGTTGCTCGAGAAATTCAAAGAGAGGTTCTTCAGAAATCCAAATCTTCC
AAGCTTTACGAAAAACATCAGTTTATCATTTCACACTGAATCGTTCCAAA
CCGTTGACGAAGATGGAGACAGAGGTATCTATATGCTCCAAGAAGTCCAA
ATCAATCAAAACAAGCTACTCATTTTCTTTGATAATGGTTGTAGTGACTT
TGTTGTCAGCCAAAAAGCAATCAAGCTACTTGGATCAAATGCAATCAAAA
CGTCGTCAAAACCAGTCATTCTTGGTGGTGTTGGAAACAGTATTACAAAA
TCAACACTTGGTCGTTATATCGTCAAACTTCCACTGAGCAATGGAGAAAT
GACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGGTTTCGTTTAC
CGGACCCTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCA
TCGAAGCTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTC
AAACCATTACCGAAGCTTCCGCGCTCAATTGGTGGTGACGTTCATATGAT
GATTGGCGTCAAGCATCTGAAGTACTTCCCAAAACACGTTTATCAAATGC
CATCAGGACTGACAATACTCGAATCACTATTTACTAGTTCAAGCGGTGGA
AGAGGAGTAATCGCTGGTCCACACCCTTCCTTCAGTTGTCTCAATGTATC
TTCAAACTTCACATCAGTTTATCATAATACGATCCATCCAATCAAAACTC
CTTTACTCGGGTTCAATGCAGACAACCCAACATCTTTGAAATACTTCACT
CAAAATAAAGAGGATCAATCGAACCAATCAATCAACATCAACGATCGAAA
AGAACATCCAATCANATAAAGAGGATCAATCAAACCAATCAACATCAACG
ATCAAAAAGAACATCCAATCGACTCACCTATCAAAATTCAGTCGAAGACT
CGATCGATCAAATCAACTCAGTCGCCCATTACTGATTCATCCAATCACAT
GAATATCGCAATCAAAGTCGATCAAATACCTCACAAACTTAACATCAATG
AGTCATCAAATCAAAACGAGAAAAGTGGTATAAAAGCATCAGTTATGTCA
CAGATCCCAAATTTCAACGAATCAAATCACATAATACCAAACGATCAAAT
TGTCAAGTCTTTATCATCATCGCCAGAAACGTCCAACGAAATCACGTCAA
ACCTTAATCATGTCATTGGTTCTTTCATCCAAAAAAGGTCAAGTATCTCG
AAAGCATTCAAACTCACGAATTCAACAGTCAGTCTATCTCAATCTGCAAT
CTGGATACCAATCATCAATCGTCT Coding sequence (CDS) from alignment at sc0004365:2..1975- >TCONS_00043583 ID=TCONS_00043583|Name=TCONS_00043583|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at sc0004365:2..1975- (Clytia hemisphaerica)
ATGCAAGAAATGGCAGCTCTAGCTAAAAAACATGATATCGAGGAACACCT
TTATTATGGAGACACCCTCACTCACATTCAAAATCTTCTTGGTGATGGCA
GAACGACGCGATTCCTTTCAGAAATCTATGAAGATGACTTCACACCCAGA
GAAACTTGGACGAAAATGGTAACATTCCTTACGAAAGAACGTCGAATAGC
TGAACAAAAACTTATCCTTCGAGACGACTCATCAAAATCAAACGACAACA
ACAAACCAAAGGATTCATCAAAGAACACCAAGGATACGAGGTACGGACAT
CCTAATTCTTATGTCTCTGATACCTCAAATCCTCTATGTGCTTTGTGTGA
AACACCTGCTGGAGTAGATCATCATGTTGCCACATCAGGCCCAGGCCAGA
CGAGATTAATTCAATATTACACTTGTCAACTGTTTGCAGAAATGACACCT
GCAAGTCGCCTCTCCCTTTTGAAATCAAAGGGGTACTGCTTTCAATGTTT
GTTTCCAGGTGCAGCCAGTGCATCTGGAAAACACAAGGATGGTAAATGCC
AACACGACTTCGTTTGTCCCGACGAATCACATCAAAAGTATTCAGTCCGA
AAACACGTCTTGGTTTGTGAGGAGCACAAGGAGGAGCCTGCCAATGTTGA
GTTGCTCGAGAAATTCAAAGAGAGGTTCTTCAGAAATCCAAATCTTCCAA
GCTTTACGAAAAACATCAGTTTATCATTTCACACTGAATCGTTCCAAACC
GTTGACGAAGATGGAGACAGAGGTATCTATATGCTCCAAGAAGTCCAAAT
CAATCAAAACAAGCTACTCATTTTCTTTGATAATGGTTGTAGTGACTTTG
TTGTCAGCCAAAAAGCAATCAAGCTACTTGGATCAAATGCAATCAAAACG
TCGTCAAAACCAGTCATTCTTGGTGGTGTTGGAAACAGTATTACAAAATC
AACACTTGGTCGTTATATCGTCAAACTTCCACTGAGCAATGGAGAAATGA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATGGTTTCGTTTACCG
GACCCTGCATCCCAAAAATCACATCAACATTTCCAACTTTTTCACTCATC
GAAGCTCACAAAGACATCGACGAATCGTATTCAAAAGCTGGTGGACTCAA
ACCATTACCGAAGCTTCCGCGCTCAATTGGTGGTGACGTTCATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043583-exon-sc0004365-1575043694:490..1975 | TCONS_00043583-exon-sc0004365-1575043694:490..1975 | Clytia hemisphaerica | exon |
| TCONS_00043583-exon-sc0004365-1575043694:2..432 | TCONS_00043583-exon-sc0004365-1575043694:2..432 | Clytia hemisphaerica | exon |
| TCONS_00043583-exon-sc0004365-1510915933:490..1975 | TCONS_00043583-exon-sc0004365-1510915933:490..1975 | Clytia hemisphaerica | exon |
| TCONS_00043583-exon-sc0004365-1510915933:2..432 | TCONS_00043583-exon-sc0004365-1510915933:2..432 | Clytia hemisphaerica | exon |
| TCONS_00043583-exon-sc0004365-1491911889:490..1975 | TCONS_00043583-exon-sc0004365-1491911889:490..1975 | Clytia hemisphaerica | exon |
| TCONS_00043583-exon-sc0004365-1491911889:2..432 | TCONS_00043583-exon-sc0004365-1491911889:2..432 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004365 | supercontig | sc0004365:2..1975 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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