TCONS_00043598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043598
Unique NameTCONS_00043598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043598 ID=TCONS_00043598|Name=TCONS_00043598|organism=Clytia hemisphaerica|type=transcript|length=582bp
TTTCTTAAATCATTTATATGCTGTAGCAACATTTGATGCCAAGAGCTACA
TTAGCTTCTTTATTGCAGGTACACCTTAAAGACCTCGGATTAAAGAAGGA
CGAAAGGCCTTGTCAAGAGTTTTATTATAGATCAGTTGATTTCACAAATT
GAAGACAAGCTGGCAAAAGTAACAAAAGTAcaagtaaaacaaaattttag
aaataaataCATTCATTTTATATTACAATAGGGAAATCAGTGTTTCTTGT
AAAGTTTGAAATCTGAGTAGCCGTACGATTGAAGGAGAAGAAAGGAAATT
CTAATTATACACTTATCATAATTGAAATCGATATTGGTCCCAAGTATTTG
TCTCGTTTGACATGGGTAaacgaaaacaatcgaaaaaggACGCAGACAAT
aacgagaagaaaaaaaacgagcCGGTACGAAGTCTTCATCGATAAGGTAA
CCAACAACAAGTTACCGAGGGAGTGGAAAGAacaaggctcgaaataacaa
tttcaagtgggtcggacaaaatgtctgatcagggttgctttagcttgaaa
attaagatttttgggtcggacatgaagccATT
Run BLAST on NCBI

transcript from alignment at sc0004376:6646..7227

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043598 ID=TCONS_00043598|Name=TCONS_00043598|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at sc0004376:6646..7227 (Clytia hemisphaerica)
AATggcttcatgtccgacccaaaaatcttaattttcaagctaaagcaacc
ctgatcagacattttgtccgacccacttgaaattgttatttcgagccttg
tTCTTTCCACTCCCTCGGTAACTTGTTGTTGGTTACCTTATCGATGAAGA
CTTCGTACCGgctcgttttttttcttctcgttATTGTCTGCGTccttttt
cgattgttttcgttTACCCATGTCAAACGAGACAAATACTTGGGACCAAT
ATCGATTTCAATTATGATAAGTGTATAATTAGAATTTCCTTTCTTCTCCT
TCAATCGTACGGCTACTCAGATTTCAAACTTTACAAGAAACACTGATTTC
CCTATTGTAATATAAAATGAATGtatttatttctaaaattttgttttact
tgTACTTTTGTTACTTTTGCCAGCTTGTCTTCAATTTGTGAAATCAACTG
ATCTATAATAAAACTCTTGACAAGGCCTTTCGTCCTTCTTTAATCCGAGG
TCTTTAAGGTGTACCTGCAATAAAGAAGCTAATGTAGCTCTTGGCATCAA
ATGTTGCTACAGCATATAAATGATTTAAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027285XLOC_027285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043598-exon-sc0004376-1491911889:6646..7227TCONS_00043598-exon-sc0004376-1491911889:6646..7227Clytia hemisphaericaexon
TCONS_00043598-exon-sc0004376-1510915933:6646..7227TCONS_00043598-exon-sc0004376-1510915933:6646..7227Clytia hemisphaericaexon
TCONS_00043598-exon-sc0004376-1575043694:6646..7227TCONS_00043598-exon-sc0004376-1575043694:6646..7227Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004376supercontigsc0004376:6646..7227 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.951146	0.474516	0.219748	0.210723	0.256535	0.101359	0.125789	0.114482	0.0801512	0.202847	0.289091	0.128006	0.126515	0.332728	0	0.0579602	0	0.0731849	0	0.31741	0.559281	0.538271	0.109057	0.198296	0.204241	0.18228	0.133033	0.556755	0	0.107559
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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