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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043627 ID=TCONS_00043627|Name=TCONS_00043627|organism=Clytia hemisphaerica|type=transcript|length=839bp
CCAAAGAGAATGTCATCTGCAAATAGGCCTAAACTAAATGTACGCACAAG
AACACTGGTCAACGAAAAAGTGGGGAATGTCAAGAAGGGTTATGAAGAAA
CAATTGAGAGATTGAAAAACGAAATTAAAGGAATAAAATATGAAATGAAG
ACAGAAAGGGAAAAACATCCggggaaaattgacaaaattgaaaatgagtA
CCACACGACAAGAGACACTTTAGGCATTGTGAAAGGCCAGATTGAagata
tcaaaatgaaaattggaCCACACGATGATATAGAAAATATGGTTTGGGGa
gctgaaacatttttccaaggaAAGAAATTGAGTCATATTTTATACGACTC
TTATGAGGAATGGTTTGAGGGAATTTCGAAAATGATGGAGGACAATACTC
CGTATAGgacatcaaaatatatttttatgaaacGAGATATGAATTACTTC
GAGACACATCCAGAATGGTATAAAAAGTATATTTTCCGAGGAGTCGAGAG
CGACGACCCTTGGGATGCTTTCGACTGTACAGATGACCATATGttcatgt
ttgaagatcttttcAGAGGATTATGGGAGAAAGGTAGTTTTGTGTTACTC
CATCCGAAGAAAGTTGAACAATGTTTGGAGTTTGAACGAGCCTGGCATGA
AACGGAATATGGGCGCAGGAGTAATTTCAGCACGTGGAGTATCAAAGATA
TTCCCAGTGATTTCCATGAACCAGGTTTTGCAATGATGGTTGGAGttttt
tacctatgatggtaccctactttcatgcaaaaaaattagaaaaaattaat
gatccaatttttcacaaagtccaaaaaacccgttttttg Run BLAST on NCBI protein sequence of TCONS_00043627-protein >TCONS_00043627-protein ID=TCONS_00043627-protein|Name=TCONS_00043627-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
PKRMSSANRPKLNVRTRTLVNEKVGNVKKGYEETIERLKNEIKGIKYEMK
TEREKHPGKIDKIENEYHTTRDTLGIVKGQIEDIKMKIGPHDDIENMVWG
AETFFQGKKLSHILYDSYEEWFEGISKMMEDNTPYRTSKYIFMKRDMNYF
ETHPEWYKKYIFRGVESDDPWDAFDCTDDHMFMFEDLFRGLWEKGSFVLL
HPKKVEQCLEFERAWHETEYGRRSNFSTWSIKDIPSDFHEPGFAMMVGVF
YL Run BLAST on NCBI transcript from alignment at sc0004409:1974..2812 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043627 ID=TCONS_00043627|Name=TCONS_00043627|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at sc0004409:1974..2812 (Clytia hemisphaerica)
caaaaaacgggttttttggactttgtgaaaaattggatcattaatttttt
ctaatttttttgcatgaaagtagggtaccatcataggtaaaaaaCTCCAA
CCATCATTGCAAAACCTGGTTCATGGAAATCACTGGGAATATCTTTGATA
CTCCACGTGCTGAAATTACTCCTGCGCCCATATTCCGTTTCATGCCAGGC
TCGTTCAAACTCCAAACATTGTTCAACTTTCTTCGGATGGAGTAACACAA
AACTACCTTTCTCCCATAATCCTCTgaaaagatcttcaaacatgaaCATA
TGGTCATCTGTACAGTCGAAAGCATCCCAAGGGTCGTCGCTCTCGACTCC
TCGGAAAATATACTTTTTATACCATTCTGGATGTGTCTCGAAGTAATTCA
TATCTCgtttcataaaaatatattttgatgtcCTATACGGAGTATTGTCC
TCCATCATTTTCGAAATTCCCTCAAACCATTCCTCATAAGAGTCGTATAA
AATATGACTCAATTTCTTtccttggaaaaatgtttcagctCCCCAAACCA
TATTTTCTATATCATCGTGTGGtccaattttcattttgatatctTCAATC
TGGCCTTTCACAATGCCTAAAGTGTCTCTTGTCGTGTGGTactcattttc
aattttgtcaattttccccGGATGTTTTTCCCTTTCTGTCTTCATTTCAT
ATTTTATTCCTTTAATTTCGTTTTTCAATCTCTCAATTGTTTCTTCATAA
CCCTTCTTGACATTCCCCACTTTTTCGTTGACCAGTGTTCTTGTGCGTAC
ATTTAGTTTAGGCCTATTTGCAGATGACATTCTCTTTGG Coding sequence (CDS) from alignment at sc0004409:1974..2812 >TCONS_00043627 ID=TCONS_00043627|Name=TCONS_00043627|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at sc0004409:1974..2812 (Clytia hemisphaerica)
tcataggtaaaaaaCTCCAACCATCATTGCAAAACCTGGTTCATGGAAAT
CACTGGGAATATCTTTGATACTCCACGTGCTGAAATTACTCCTGCGCCCA
TATTCCGTTTCATGCCAGGCTCGTTCAAACTCCAAACATTGTTCAACTTT
CTTCGGATGGAGTAACACAAAACTACCTTTCTCCCATAATCCTCTgaaaa
gatcttcaaacatgaaCATATGGTCATCTGTACAGTCGAAAGCATCCCAA
GGGTCGTCGCTCTCGACTCCTCGGAAAATATACTTTTTATACCATTCTGG
ATGTGTCTCGAAGTAATTCATATCTCgtttcataaaaatatattttgatg
tcCTATACGGAGTATTGTCCTCCATCATTTTCGAAATTCCCTCAAACCAT
TCCTCATAAGAGTCGTATAAAATATGACTCAATTTCTTtccttggaaaaa
tgtttcagctCCCCAAACCATATTTTCTATATCATCGTGTGGtccaattt
tcattttgatatctTCAATCTGGCCTTTCACAATGCCTAAAGTGTCTCTT
GTCGTGTGGTactcattttcaattttgtcaattttccccGGATGTTTTTC
CCTTTCTGTCTTCATTTCATATTTTATTCCTTTAATTTCGTTTTTCAATC
TCTCAATTGTTTCTTCATAACCCTTCTTGACATTCCCCACTTTTTCGTTG
ACCAGTGTTCTTGTGCGTACATTTAGTTTAGGCCTATTTGCAGATGACAT
TCTCTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043627-exon-sc0004409-1491911889:1974..2812 | TCONS_00043627-exon-sc0004409-1491911889:1974..2812 | Clytia hemisphaerica | exon |
| TCONS_00043627-exon-sc0004409-1510915933:1974..2812 | TCONS_00043627-exon-sc0004409-1510915933:1974..2812 | Clytia hemisphaerica | exon |
| TCONS_00043627-exon-sc0004409-1575043694:1974..2812 | TCONS_00043627-exon-sc0004409-1575043694:1974..2812 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004409 | supercontig | sc0004409:1974..2812 . |
Blast
The following BLAST results are available for this feature:
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