TCONS_00043663 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043663
Unique NameTCONS_00043663
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043663 ID=TCONS_00043663|Name=TCONS_00043663|organism=Clytia hemisphaerica|type=transcript|length=421bp
cCAGGAGTAAAATATCTCACAATGTCAATGACTAGAACCGTTTTTTTCTG
AGTGGTGTTTTAAGAGCAATGCCAACATTGCTTGGTTTTGCTGTTGCTGC
tgtaaaattagttgttgcatTGTATTTTCTCGAGTCTCCGCAATTTGCAG
CTCACGTTCTCGAAATTCCTTGTCTACTTGCATTTTATCTCTTAAATATT
TCACAGTTTCATCAGAGGACCTCCTAGATTTACCTTTCTTGGCACTTGAG
GTTGGTGATTCATCTGTCGAATTACGTTTTCTTGTTTCAGCATGCGTTTC
CATTGCTTGCTGTCTCATCTCTACTGCAGTTTGACGTTCTTTTTCTGACT
TTTGTTTCTCTTGCTCTGAAGCTACCTCTATATCTGCGAAACGTTGAATG
ATTTCTTCTAAAGCTTGTTCA
Run BLAST on NCBI

protein sequence of TCONS_00043663-protein

>TCONS_00043663-protein ID=TCONS_00043663-protein|Name=TCONS_00043663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
EQALEEIIQRFADIEVASEQEKQKSEKERQTAVEMRQQAMETHAETRKRN
STDESPTSSAKKGKSRRSSDETVKYLRDKMQVDKEFRERELQIAETRENT
MQQLILQQQQQNQAMLALLLKHHSEKNGSSH
Run BLAST on NCBI

transcript from alignment at sc0004447:114..534

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043663 ID=TCONS_00043663|Name=TCONS_00043663|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0004447:114..534 (Clytia hemisphaerica)
TGAACAAGCTTTAGAAGAAATCATTCAACGTTTCGCAGATATAGAGGTAG
CTTCAGAGCAAGAGAAACAAAAGTCAGAAAAAGAACGTCAAACTGCAGTA
GAGATGAGACAGCAAGCAATGGAAACGCATGCTGAAACAAGAAAACGTAA
TTCGACAGATGAATCACCAACCTCAAGTGCCAAGAAAGGTAAATCTAGGA
GGTCCTCTGATGAAACTGTGAAATATTTAAGAGATAAAATGCAAGTAGAC
AAGGAATTTCGAGAACGTGAGCTGCAAATTGCGGAGACTCGAGAAAATAC
AatgcaacaactaattttacaGCAGCAACAGCAAAACCAAGCAATGTTGG
CATTGCTCTTAAAACACCACTCAGAAAAAAACGGTTCTAGTCATTGACAT
TGTGAGATATTTTACTCCTGg

Coding sequence (CDS) from alignment at sc0004447:114..534

>TCONS_00043663 ID=TCONS_00043663|Name=TCONS_00043663|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0004447:114..534 (Clytia hemisphaerica)
GAACAAGCTTTAGAAGAAATCATTCAACGTTTCGCAGATATAGAGGTAGC
TTCAGAGCAAGAGAAACAAAAGTCAGAAAAAGAACGTCAAACTGCAGTAG
AGATGAGACAGCAAGCAATGGAAACGCATGCTGAAACAAGAAAACGTAAT
TCGACAGATGAATCACCAACCTCAAGTGCCAAGAAAGGTAAATCTAGGAG
GTCCTCTGATGAAACTGTGAAATATTTAAGAGATAAAATGCAAGTAGACA
AGGAATTTCGAGAACGTGAGCTGCAAATTGCGGAGACTCGAGAAAATACA
atgcaacaactaattttacaGCAGCAACAGCAAAACCAAGCAATGTTGGC
ATTGCTCTTAAAACACCACTCAGAAAAAAACGGTTCTAGTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027347XLOC_027347Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043663-proteinTCONS_00043663-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043663-exon-sc0004447-1491911889:114..534TCONS_00043663-exon-sc0004447-1491911889:114..534Clytia hemisphaericaexon
TCONS_00043663-exon-sc0004447-1510915933:114..534TCONS_00043663-exon-sc0004447-1510915933:114..534Clytia hemisphaericaexon
TCONS_00043663-exon-sc0004447-1575043694:114..534TCONS_00043663-exon-sc0004447-1575043694:114..534Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004447supercontigsc0004447:114..534 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.669391	0.489572	1.70532	1.66839	1.12839	0.535001	0.215152	0.201423	0.423062	0.698708	0.508637	1.11453	0.222596	0.231168	0.285077	0.203954	0.753764	0.257528	0.177894	0	0	0.236763	0.959389	0.348889	0	0.481064	0	0.244893	0.185743	0.567728
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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