TCONS_00043669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043669
Unique NameTCONS_00043669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043669 ID=TCONS_00043669|Name=TCONS_00043669|organism=Clytia hemisphaerica|type=transcript|length=424bp
GCAACACTGGTGTAATGCTAGTTGTactatttttcttgaaaatggaAACG
GTGGTTGGTTCATCATCGAGGGATGCATAGCAGTGGACGGTGCCAGGTTC
ATCCTTTGACATATGAAAGTGGTGGTACGATAATAAGTCCTTTATGGTCT
TGAAATtgagaactttttcaaaataggtAGTCCAGTCGTACGTGTGGACA
TTCATCTCTTTATTGTGGTTACCAACCAGCACTGAGAAATTGCATTTTGA
CTTGTCACAGACATCGGCAATCTCATAAATTGAAGAAACGCGTGTGGAAc
gtaatttctttttgaagctACCAAAGCACCTTGAAATGAAATGATAGATA
ATGTTATGAAATGAGcggttttcattttcaaattttgtgatttttgccaa
attaaagTCATAGCTAAAATTTTG
Run BLAST on NCBI

protein sequence of TCONS_00043669-protein

>TCONS_00043669-protein ID=TCONS_00043669-protein|Name=TCONS_00043669-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
QNFSYDFNLAKITKFENENRSFHNIIYHFISRCFGSFKKKLRSTRVSSIY
EIADVCDKSKCNFSVLVGNHNKEMNVHTYDWTTYFEKVLNFKTIKDLLSY
HHFHMSKDEPGTVHCYASLDDEPTTVSIFKKNSTTSITPVL
Run BLAST on NCBI

transcript from alignment at sc0004452:6413..6836

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043669 ID=TCONS_00043669|Name=TCONS_00043669|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0004452:6413..6836 (Clytia hemisphaerica)
CAAAATTTTAGCTATGActttaatttggcaaaaatcacaaaatttgaaaa
tgaaaaccgCTCATTTCATAACATTATCTATCATTTCATTTCAAGGTGCT
TTGGTagcttcaaaaagaaattacgTTCCACACGCGTTTCTTCAATTTAT
GAGATTGCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTGCTGGT
TGGTAACCACAATAAAGAGATGAATGTCCACACGTACGACTGGACTacct
attttgaaaaagttctcaATTTCAAGACCATAAAGGACTTATTATCGTAC
CACCACTTTCATATGTCAAAGGATGAACCTGGCACCGTCCACTGCTATGC
ATCCCTCGATGATGAACCAACCACCGTTtccattttcaagaaaaatagtA
CAACTAGCATTACACCAGTGTTGC

Coding sequence (CDS) from alignment at sc0004452:6413..6836

>TCONS_00043669 ID=TCONS_00043669|Name=TCONS_00043669|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0004452:6413..6836 (Clytia hemisphaerica)
CAAAATTTTAGCTATGActttaatttggcaaaaatcacaaaatttgaaaa
tgaaaaccgCTCATTTCATAACATTATCTATCATTTCATTTCAAGGTGCT
TTGGTagcttcaaaaagaaattacgTTCCACACGCGTTTCTTCAATTTAT
GAGATTGCCGATGTCTGTGACAAGTCAAAATGCAATTTCTCAGTGCTGGT
TGGTAACCACAATAAAGAGATGAATGTCCACACGTACGACTGGACTacct
attttgaaaaagttctcaATTTCAAGACCATAAAGGACTTATTATCGTAC
CACCACTTTCATATGTCAAAGGATGAACCTGGCACCGTCCACTGCTATGC
ATCCCTCGATGATGAACCAACCACCGTTtccattttcaagaaaaatagtA
CAACTAGCATTACACCAGTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027353XLOC_027353Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043669-exon-sc0004452-1491911889:6413..6836TCONS_00043669-exon-sc0004452-1491911889:6413..6836Clytia hemisphaericaexon
TCONS_00043669-exon-sc0004452-1510915933:6413..6836TCONS_00043669-exon-sc0004452-1510915933:6413..6836Clytia hemisphaericaexon
TCONS_00043669-exon-sc0004452-1575043694:6413..6836TCONS_00043669-exon-sc0004452-1575043694:6413..6836Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043669-proteinTCONS_00043669-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004452supercontigsc0004452:6413..6836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0696425	0	0	0	0.462526	0	0	0.173606	0.0829423	0	1.12119e-07	0	0.181657	0	0	0.100554	0	0.46073	0	0.550669	0	0.165995	0.295445	0.502919	0.200742	0.408184	0.572346	0	0.183151	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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