TCONS_00043676 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043676
Unique NameTCONS_00043676
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043676 ID=TCONS_00043676|Name=TCONS_00043676|organism=Clytia hemisphaerica|type=transcript|length=391bp
TTCTTCTAAGTCGGCAATTCTTGCATCTTTCGTCAAGAGTTCGGCCTCTC
GACCTTTACTCTGGCCTTTGATGAGGTCTATTGTGTTTCGGCAAATTCCG
ATCTCCTTTTGAAGTTTCGTGATTTCCTCTccatcttggatttttttaat
CTCGTGCTCTTGGATCACGAAATCGCGCTCCTGGAGCATTCGGGTTAAGT
TATCAACTTTCTCAGCTTCCGGTCGTTCGTCGGTGAGCGCGTTCAATCGA
TCAATAGATTGGTTATTGGCGATGACCAATAGCTGAGAGTTTACCTGCAG
GTCTTCCTTCTCTGAGGATAGCTGACCCACAGTTTCCAAAAGGAACTTGT
GTTCTTTTTCCTTCATATTAAATTGCTAGAAAAAGAATATA
Run BLAST on NCBI

transcript from alignment at sc0004462:5505..5939+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043676 ID=TCONS_00043676|Name=TCONS_00043676|organism=Clytia hemisphaerica|type=transcript|length=435bp|location=Sequence derived from alignment at sc0004462:5505..5939+ (Clytia hemisphaerica)
TTCTTCTAAGTCGGCAATTCTTGCATCTTTCGTCAAGAGTTCGGCCTCTC
GACCTTTACTCTGGCCTTTGATGAGGTCTATTGTGTTTCGGCAAATTCCG
ATCTCCTTTTGAAGNTGAGGTCTATTGTGTTTCGGCAAATTCCGATCTCC
TTTTGAAGTTTCGTGATTTCCTCTccatcttggatttttttaatCTCGTG
CTCTTGGATCACGAAATCGCGCTCCTGGAGCATTCGGGTTAAGTTATCAA
CTTTCTCAGCTTCCGGTCGTTCGTCGGTGAGCGCGTTCAATCGATCAATA
GATTGGTTATTGGCGATGACCAATAGCTGAGAGTTTACCTGCAGGTCTTC
CTTCTCTGAGGATAGCTGACCCACAGTTTCCAAAAGGAACTTGTGTTCTT
TTTCCTTCATATTAAATTGCTAGAAAAAGAATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027360XLOC_027360Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043676-exon-sc0004462-1491911889:5505..5579TCONS_00043676-exon-sc0004462-1491911889:5505..5579Clytia hemisphaericaexon
TCONS_00043676-exon-sc0004462-1510915933:5505..5579TCONS_00043676-exon-sc0004462-1510915933:5505..5579Clytia hemisphaericaexon
TCONS_00043676-exon-sc0004462-1575043694:5505..5579TCONS_00043676-exon-sc0004462-1575043694:5505..5579Clytia hemisphaericaexon
TCONS_00043676-exon-sc0004462-1491911889:5624..5939TCONS_00043676-exon-sc0004462-1491911889:5624..5939Clytia hemisphaericaexon
TCONS_00043676-exon-sc0004462-1510915933:5624..5939TCONS_00043676-exon-sc0004462-1510915933:5624..5939Clytia hemisphaericaexon
TCONS_00043676-exon-sc0004462-1575043694:5624..5939TCONS_00043676-exon-sc0004462-1575043694:5624..5939Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004462supercontigsc0004462:5505..5939 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.679842	0.0230944	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.216838	0.188472	0	0	0	0.464916	0.451285	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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