TCONS_00043681 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043681
Unique NameTCONS_00043681
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043681 ID=TCONS_00043681|Name=TCONS_00043681|organism=Clytia hemisphaerica|type=transcript|length=494bp
ATTATACGTATTTTACAATTGTCTTGTGTTGAATCTTTTCGGGTGTTTAC
TCCATGCAGTgttgagtctttctttgaagactttgactGTCTTTGCCTCA
GCGACATCTTTTGGCAATTTATTCCAGGTTGGtatagttcgataaaagaa
gGAATTTGTTTGTACACCACGGAGTCCATCACTTCCAAAGTTTGGAATCA
TCTCAAAGTTGTGCCTTCTGTTTGGTCGCGTTCGACGGGCTATCTTGTTT
GGGATGGTATCTTTTTCGTAATAGTTGATGTGCTTGTAAAGTTGGACCAT
GTCACAAAAGTGTCTTCTAAACTCGAGCGTAGGAAGATCTAGTTCACGCA
ATCGTTCTTCATAAGACATATCACGACATTTTTGAACAAGTTTTGTTGCC
CGTCTTTGTACTCTTTCAATCAGATTTACGTGTTTACGTAGAAACGGAGA
CCATACTGACTGAGCGTACTCCAGATGCGGGCGAACAAACGCAC
Run BLAST on NCBI

protein sequence of TCONS_00043681-protein

>TCONS_00043681-protein ID=TCONS_00043681-protein|Name=TCONS_00043681-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
AFVRPHLEYAQSVWSPFLRKHVNLIERVQRRATKLVQKCRDMSYEERLRE
LDLPTLEFRRHFCDMVQLYKHINYYEKDTIPNKIARRTRPNRRHNFEMIP
NFGSDGLRGVQTNSFFYRTIPTWNKLPKDVAEAKTVKVFKERLNTAWSKH
PKRFNTRQL
Run BLAST on NCBI

transcript from alignment at sc0004466:2389..2882

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043681 ID=TCONS_00043681|Name=TCONS_00043681|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at sc0004466:2389..2882 (Clytia hemisphaerica)
GTGCGTTTGTTCGCCCGCATCTGGAGTACGCTCAGTCAGTATGGTCTCCG
TTTCTACGTAAACACGTAAATCTGATTGAAAGAGTACAAAGACGGGCAAC
AAAACTTGTTCAAAAATGTCGTGATATGTCTTATGAAGAACGATTGCGTG
AACTAGATCTTCCTACGCTCGAGTTTAGAAGACACTTTTGTGACATGGTC
CAACTTTACAAGCACATCAACTATTACGAAAAAGATACCATCCCAAACAA
GATAGCCCGTCGAACGCGACCAAACAGAAGGCACAACTTTGAGATGATTC
CAAACTTTGGAAGTGATGGACTCCGTGGTGTACAAACAAATTCcttcttt
tatcgaactataCCAACCTGGAATAAATTGCCAAAAGATGTCGCTGAGGC
AAAGACagtcaaagtcttcaaagaaagactcaacACTGCATGGAGTAAAC
ACCCGAAAAGATTCAACACAAGACAATTGTAAAATACGTATAAT

Coding sequence (CDS) from alignment at sc0004466:2389..2882

>TCONS_00043681 ID=TCONS_00043681|Name=TCONS_00043681|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at sc0004466:2389..2882 (Clytia hemisphaerica)
GCGTTTGTTCGCCCGCATCTGGAGTACGCTCAGTCAGTATGGTCTCCGTT
TCTACGTAAACACGTAAATCTGATTGAAAGAGTACAAAGACGGGCAACAA
AACTTGTTCAAAAATGTCGTGATATGTCTTATGAAGAACGATTGCGTGAA
CTAGATCTTCCTACGCTCGAGTTTAGAAGACACTTTTGTGACATGGTCCA
ACTTTACAAGCACATCAACTATTACGAAAAAGATACCATCCCAAACAAGA
TAGCCCGTCGAACGCGACCAAACAGAAGGCACAACTTTGAGATGATTCCA
AACTTTGGAAGTGATGGACTCCGTGGTGTACAAACAAATTCcttctttta
tcgaactataCCAACCTGGAATAAATTGCCAAAAGATGTCGCTGAGGCAA
AGACagtcaaagtcttcaaagaaagactcaacACTGCATGGAGTAAACAC
CCGAAAAGATTCAACACAAGACAATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027365XLOC_027365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043681-proteinTCONS_00043681-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043681-exon-sc0004466-1491911889:2389..2882TCONS_00043681-exon-sc0004466-1491911889:2389..2882Clytia hemisphaericaexon
TCONS_00043681-exon-sc0004466-1510915933:2389..2882TCONS_00043681-exon-sc0004466-1510915933:2389..2882Clytia hemisphaericaexon
TCONS_00043681-exon-sc0004466-1575043694:2389..2882TCONS_00043681-exon-sc0004466-1575043694:2389..2882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004466supercontigsc0004466:2389..2882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.80357	6.56836	10.6297	10.5612	10.029	5.35634	4.47195	5.65774	2.85184	2.99632	2.86342	3.33497	3.54411	2.32223	2.73276	4.16986	2.00858	3.65779	2.71714	3.07078	2.91153	3.3498	1.55981	3.04223	8.72601	7.21954	2.06981	2.29356	2.31667	2.33328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043681 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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