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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043688 ID=TCONS_00043688|Name=TCONS_00043688|organism=Clytia hemisphaerica|type=transcript|length=1300bp
AAACAGTGATTAGATTTGAAAAAGTACAATGcgtaagttaataatattct
tcttatttatattttacaCAAATAGGATTTTATACGTCCTTTGTTACTTT
GGTACTCTCAAATTCGAGTCTTTCTTCATCTTTGCCAAGACAATGGCTCT
CGAATATTCCACTGTATTAATCTCTGGTCGGAAAATCGCGAAATAAATCC
TTCGAAAATAACAGAAGATGATCAAGACATTCATATTAAGTGTTATAGCC
AACCAATAAACAGCCTCTTTTTGAAGAATATCTTTTTGGAAAAACACAAT
CGGGTACAAAATAATGAAAACCACGATCGCAATAAAATTTCCGTAAACAA
TAGGCATTGTTTCTTTAAAAGCACCTGGTAAACGTCTTCCACGAAAAGCT
TGCACAAAACATGTTATATGCAGACAAATGGCAAACGCAATCAACACATT
TTGACTTGATCCAGTACCACAATATGAAGTTTTCAAAAACAATCGTTTTT
GAATCAATGTTCGAATCATCAAAGGTTTGGTTTGAAGCAATACAATTAAA
ATTAGATTGTTTGCCACAACGATAACCAGCATTAGAAAAACGTCTGTGGC
TCTCGATTTTCGTATTTCTGATTTCGTCATTTTGACTCTTGATTGAAAAG
CTTTTAACACTTGTTGTGCTCTCAATAATATAATTCCAACGATAATTGTG
TAGAAAACTGTAAACGAAATCATGCGAAAATGACATTTTAAGAGGTTTGG
CGCACCATAGTAACTGAGAAACAGTAAAACAAAATTTAGAGCAATGATGA
TTAAATGAGCATACGTCATGCTGACATCAGCAGCCTTCATCATAGGGGTT
GCACGGTACTTGAAAAACTCCATAAACACAAAAACACATGAACACAATCC
AAAAGAAGTCAGTATGGTAGCAAATACCACAAATGGTGATTTCAAAGAAT
GCGTTTTTGAAATGTAAGGGTCGTAACAAGAATCTCGTTTTTCGGACGAA
AGATAATCATTCGGACATTTATTGCAAGTCGTATTTCCATGATGCAGCTT
ATAGAATCCTTGTTCACAAAGTTGACACGTCCAACGGTATGTGTCATCCC
AATCCGTAGTATTATCAGCCAACTTGGTGTAAAGATATTCATTTCCTGGT
TGACAGACAACTTGAGGGCAGATATTTTCTTTACTATACTTCCCAATTTG
TTCAACAATATACGATGATGGTGTGTATACTAGAAATTTCAGAATTGACT
TGCTCTTTACTGCTACTTTCTGTCCGACATATACCCTATGATAAACTTTC Run BLAST on NCBI protein sequence of TCONS_00043688-protein >TCONS_00043688-protein ID=TCONS_00043688-protein|Name=TCONS_00043688-protein|organism=Clytia hemisphaerica|type=polypeptide|length=401bp
KVYHRVYVGQKVAVKSKSILKFLVYTPSSYIVEQIGKYSKENICPQVVCQ
PGNEYLYTKLADNTTDWDDTYRWTCQLCEQGFYKLHHGNTTCNKCPNDYL
SSEKRDSCYDPYISKTHSLKSPFVVFATILTSFGLCSCVFVFMEFFKYRA
TPMMKAADVSMTYAHLIIIALNFVLLFLSYYGAPNLLKCHFRMISFTVFY
TIIVGIILLRAQQVLKAFQSRVKMTKSEIRKSRATDVFLMLVIVVANNLI
LIVLLQTKPLMIRTLIQKRLFLKTSYCGTGSSQNVLIAFAICLHITCFVQ
AFRGRRLPGAFKETMPIVYGNFIAIVVFIILYPIVFFQKDILQKEAVYWL
AITLNMNVLIIFCYFRRIYFAIFRPEINTVEYSRAIVLAKMKKDSNLRVP
K Run BLAST on NCBI transcript from alignment at sc0004468:4425..5724 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043688 ID=TCONS_00043688|Name=TCONS_00043688|organism=Clytia hemisphaerica|type=transcript|length=1300bp|location=Sequence derived from alignment at sc0004468:4425..5724 (Clytia hemisphaerica)
GAAAGTTTATCATAGGGTATATGTCGGACAGAAAGTAGCAGTAAAGAGCA
AGTCAATTCTGAAATTTCTAGTATACACACCATCATCGTATATTGTTGAA
CAAATTGGGAAGTATAGTAAAGAAAATATCTGCCCTCAAGTTGTCTGTCA
ACCAGGAAATGAATATCTTTACACCAAGTTGGCTGATAATACTACGGATT
GGGATGACACATACCGTTGGACGTGTCAACTTTGTGAACAAGGATTCTAT
AAGCTGCATCATGGAAATACGACTTGCAATAAATGTCCGAATGATTATCT
TTCGTCCGAAAAACGAGATTCTTGTTACGACCCTTACATTTCAAAAACGC
ATTCTTTGAAATCACCATTTGTGGTATTTGCTACCATACTGACTTCTTTT
GGATTGTGTTCATGTGTTTTTGTGTTTATGGAGTTTTTCAAGTACCGTGC
AACCCCTATGATGAAGGCTGCTGATGTCAGCATGACGTATGCTCATTTAA
TCATCATTGCTCTAAATTTTGTTTTACTGTTTCTCAGTTACTATGGTGCG
CCAAACCTCTTAAAATGTCATTTTCGCATGATTTCGTTTACAGTTTTCTA
CACAATTATCGTTGGAATTATATTATTGAGAGCACAACAAGTGTTAAAAG
CTTTTCAATCAAGAGTCAAAATGACGAAATCAGAAATACGAAAATCGAGA
GCCACAGACGTTTTTCTAATGCTGGTTATCGTTGTGGCAAACAATCTAAT
TTTAATTGTATTGCTTCAAACCAAACCTTTGATGATTCGAACATTGATTC
AAAAACGATTGTTTTTGAAAACTTCATATTGTGGTACTGGATCAAGTCAA
AATGTGTTGATTGCGTTTGCCATTTGTCTGCATATAACATGTTTTGTGCA
AGCTTTTCGTGGAAGACGTTTACCAGGTGCTTTTAAAGAAACAATGCCTA
TTGTTTACGGAAATTTTATTGCGATCGTGGTTTTCATTATTTTGTACCCG
ATTGTGTTTTTCCAAAAAGATATTCTTCAAAAAGAGGCTGTTTATTGGTT
GGCTATAACACTTAATATGAATGTCTTGATCATCTTCTGTTATTTTCGAA
GGATTTATTTCGCGATTTTCCGACCAGAGATTAATACAGTGGAATATTCG
AGAGCCATTGTCTTGGCAAAGATGAAGAAAGACTCGAATTTGAGAGTACC
AAAGTAACAAAGGACGTATAAAATCCTATTTGtgtaaaatataaataaga
agaatattattaacttacgCATTGTACTTTTTCAAATCTAATCACTGTTT
Coding sequence (CDS) from alignment at sc0004468:4425..5724 >TCONS_00043688 ID=TCONS_00043688|Name=TCONS_00043688|organism=Clytia hemisphaerica|type=CDS|length=1206bp|location=Sequence derived from alignment at sc0004468:4425..5724 (Clytia hemisphaerica)
AAAGTTTATCATAGGGTATATGTCGGACAGAAAGTAGCAGTAAAGAGCAA
GTCAATTCTGAAATTTCTAGTATACACACCATCATCGTATATTGTTGAAC
AAATTGGGAAGTATAGTAAAGAAAATATCTGCCCTCAAGTTGTCTGTCAA
CCAGGAAATGAATATCTTTACACCAAGTTGGCTGATAATACTACGGATTG
GGATGACACATACCGTTGGACGTGTCAACTTTGTGAACAAGGATTCTATA
AGCTGCATCATGGAAATACGACTTGCAATAAATGTCCGAATGATTATCTT
TCGTCCGAAAAACGAGATTCTTGTTACGACCCTTACATTTCAAAAACGCA
TTCTTTGAAATCACCATTTGTGGTATTTGCTACCATACTGACTTCTTTTG
GATTGTGTTCATGTGTTTTTGTGTTTATGGAGTTTTTCAAGTACCGTGCA
ACCCCTATGATGAAGGCTGCTGATGTCAGCATGACGTATGCTCATTTAAT
CATCATTGCTCTAAATTTTGTTTTACTGTTTCTCAGTTACTATGGTGCGC
CAAACCTCTTAAAATGTCATTTTCGCATGATTTCGTTTACAGTTTTCTAC
ACAATTATCGTTGGAATTATATTATTGAGAGCACAACAAGTGTTAAAAGC
TTTTCAATCAAGAGTCAAAATGACGAAATCAGAAATACGAAAATCGAGAG
CCACAGACGTTTTTCTAATGCTGGTTATCGTTGTGGCAAACAATCTAATT
TTAATTGTATTGCTTCAAACCAAACCTTTGATGATTCGAACATTGATTCA
AAAACGATTGTTTTTGAAAACTTCATATTGTGGTACTGGATCAAGTCAAA
ATGTGTTGATTGCGTTTGCCATTTGTCTGCATATAACATGTTTTGTGCAA
GCTTTTCGTGGAAGACGTTTACCAGGTGCTTTTAAAGAAACAATGCCTAT
TGTTTACGGAAATTTTATTGCGATCGTGGTTTTCATTATTTTGTACCCGA
TTGTGTTTTTCCAAAAAGATATTCTTCAAAAAGAGGCTGTTTATTGGTTG
GCTATAACACTTAATATGAATGTCTTGATCATCTTCTGTTATTTTCGAAG
GATTTATTTCGCGATTTTCCGACCAGAGATTAATACAGTGGAATATTCGA
GAGCCATTGTCTTGGCAAAGATGAAGAAAGACTCGAATTTGAGAGTACCA
AAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043688-exon-sc0004468-1491911889:4425..5724 | TCONS_00043688-exon-sc0004468-1491911889:4425..5724 | Clytia hemisphaerica | exon |
| TCONS_00043688-exon-sc0004468-1510915933:4425..5724 | TCONS_00043688-exon-sc0004468-1510915933:4425..5724 | Clytia hemisphaerica | exon |
| TCONS_00043688-exon-sc0004468-1575043694:4425..5724 | TCONS_00043688-exon-sc0004468-1575043694:4425..5724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004468 | supercontig | sc0004468:4425..5724 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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