TCONS_00043700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043700
Unique NameTCONS_00043700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043700 ID=TCONS_00043700|Name=TCONS_00043700|organism=Clytia hemisphaerica|type=transcript|length=817bp
aaaaaatgttccTTTGTTTATTTTCCTGAGAAATCGGGCGTTTAactccg
caaagccttaaaatatttttaacttctTCTTTGTATTTTGGTCAGTGGAA
GCATTATGTTCCTTACCTAGTTTATAAACGTATGACTGAGATTCTTCACT
TCGAGCACCGTTcaagtcaatttttttacttttctttactACTTAATATC
TATATCTGTATCTGATGTCGGTATTGTAAGAGTTAAATAAAGTTCATCCA
TTCTTgccgggatgagctggagtttttataagatacttcactaattggtc
atttaaagtaatagcgttctttagaaaaagtaatacgattgtttttatta
catcttaacgaccaaccaaatcgcATAAGAGCTTGCAAAAACAGCTTGTC
CCATTCTTGCCTAGAATCTCAATCAATTGAGCAATATTGTATTCATCAct
gaagtattttttcaaaaatttccttcctTCGATCATTTTTTCTTCCTTGT
TTGTATCCAAAATGTTTTGTCGAGGAACAAAGAAATTTGGTAGATTTTGT
TCTTCATAATGTTGAAGTAGTCTTCGAAATATGGTCAATATTAATTCCAC
TTGATCGTATTCTTGTCCTTCAAAAGTGTCCAATTCTCTTGATAACCACA
TGAAAACTGTCTTCAGCTCGTACGATTTGACGTGGCACTAAAGCAAAGAG
AAAAGGTACCTTAATCATTCAAATCAAAANTCCACTTGATCGTATTCTTG
TCCTTCAAAAGTGTCCAATTCTCTTGATAACCACATGAAAACTGTCTTCA
GCTCGTACGATTTGACG
Run BLAST on NCBI

transcript from alignment at sc0004484:5869..6685

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043700 ID=TCONS_00043700|Name=TCONS_00043700|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at sc0004484:5869..6685 (Clytia hemisphaerica)
CGTCAAATCGTACGAGCTGAAGACAGTTTTCATGTGGTTATCAAGAGAAT
TGGACACTTTTGAAGGACAAGAATACGATCAAGTGGANTTTTGATTTGAA
TGATTAAGGTACCTTTTCTCTTTGCTTTAGTGCCACGTCAAATCGTACGA
GCTGAAGACAGTTTTCATGTGGTTATCAAGAGAATTGGACACTTTTGAAG
GACAAGAATACGATCAAGTGGAATTAATATTGACCATATTTCGAAGACTA
CTTCAACATTATGAAGAACAAAATCTACCAAATTTCTTTGTTCCTCGACA
AAACATTTTGGATACAAACAAGGAAGAAAAAATGATCGAaggaaggaaat
ttttgaaaaaatacttcagTGATGAATACAATATTGCTCAATTGATTGAG
ATTCTAGGCAAGAATGGGACAAGCTGTTTTTGCAAGCTCTTATgcgattt
ggttggtcgttaagatgtaataaaaacaatcgtattactttttctaaaga
acgctattactttaaatgaccaattagtgaagtatcttataaaaactcca
gctcatcccggcAAGAATGGATGAACTTTATTTAACTCTTACAATACCGA
CATCAGATACAGATATAGATATTAAGTagtaaagaaaagtaaaaaaattg
acttgAACGGTGCTCGAAGTGAAGAATCTCAGTCATACGTTTATAAACTA
GGTAAGGAACATAATGCTTCCACTGACCAAAATACAAAGAagaagttaaa
aatattttaaggctttgcggagtTAAACGCCCGATTTCTCAGGAAAATAA
ACAAAggaacatttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027384XLOC_027384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043700-exon-sc0004484-1491911889:5869..6685TCONS_00043700-exon-sc0004484-1491911889:5869..6685Clytia hemisphaericaexon
TCONS_00043700-exon-sc0004484-1510915933:5869..6685TCONS_00043700-exon-sc0004484-1510915933:5869..6685Clytia hemisphaericaexon
TCONS_00043700-exon-sc0004484-1575043694:5869..6685TCONS_00043700-exon-sc0004484-1575043694:5869..6685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004484supercontigsc0004484:5869..6685 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0889827	0.0580469	0.0683429	0.0650305	0.472816	0.124415	0.376108	0.42201	0.0983435	0	0	0.042302	0.155541	0.161209	0	0.106771	0.390476	0.0480382	0.186953	0	0.931027	0.861208	0.62428	1.142	5.59297	5.93984	1.1515	1.06253	0	0.0661188
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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