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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043710 ID=TCONS_00043710|Name=TCONS_00043710|organism=Clytia hemisphaerica|type=transcript|length=1085bp
GTTTTTGCAGGTATGTTTGCTTCTAGATGTTGTCTGAACTTGATTCTGTT
GTCATAAATATGCCAGTTGTTTAGATAGTTCTGAAGGAGTTGTTGATTAG
CAGCCTCCAGAGTTGATAAGGGAGATAATTTTTGGAATTTTCGATTTATA
ATGAGGTTGAATATATCCACGTTCTCTTGGAGACATAGGTCAAAGATGTC
TTGTATTATTGAGAATGTGCGGTCTTCGTTTGAGCTGGTGAGAAGGTTGA
TAAGATATGTCGAGGTAGTTGGGTTTCTCATTAAAAGTTGAATCAAGTTC
ATTTTTCTGTTCTTCAAGTCATGTGCAACAGAGTGTAAATTGAACAGTTT
ATTAATATCATTGCTGCAGTGTTTTGATAGCCCTAACAGTTGTTTTAAGG
CACAACGACATTGTCTGTTTACGTTATCGGTGAATGATTTTGATGTATTT
GTCAGTTCCAGTCCATATAGCATCTTTGGTACAACAATTGAGCGAAAGAT
TGTCGCTACAGTGCTTGGGTGCATTTTCCTGACACCACATGAAGTTAACG
ATGCTGTCGTCGCCCACATTTCTGCAATTCGAGAGTCCTGGTGATTTTTC
AACGAAAGTTTGTCTCTGTCCATTTTCCAATTGAAACCCAGATGTTTGAG
TTGACACTGCTGTTCAATTTGTTTTTCATTGAGGGTAATACATGGATTGC
ATAAAGGTGATTGCCCGGATATCAGAAATTGTGTTTTAGAAGGGTTGAAT
TTGAGACCGTTTTCAATTCCAAAAAGTGTACATTCGTTAATCATTTGCTG
TAGGTGTTTCAAATTTGGACTCAAGAGGATGATATCGTCAGCGAATACTA
TAATCGATGTGTTAATTTGACCTGGTAGATATGTCCCGATATTGAGTCTC
TGAATATTATCAATGATGTCTTCTGTGTAAAAGTTATACAAGTATGGGGA
TAATATTGAGCCTTGACGTACACCCTGGGCAAGACGAAAGGGTGATGTAA
TGAAGTTTCTGTATTTTGTAGCTGCCTCACCATTTATgtataattttatc
aaaaatcttaGCACAACATCTGGtagctttctttg Run BLAST on NCBI protein sequence of TCONS_00043710-protein >TCONS_00043710-protein ID=TCONS_00043710-protein|Name=TCONS_00043710-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
QRKLPDVVLRFLIKLYINGEAATKYRNFITSPFRLAQGVRQGSILSPYLY
NFYTEDIIDNIQRLNIGTYLPGQINTSIIVFADDIILLSPNLKHLQQMIN
ECTLFGIENGLKFNPSKTQFLISGQSPLCNPCITLNEKQIEQQCQLKHLG
FNWKMDRDKLSLKNHQDSRIAEMWATTASLTSCGVRKMHPSTVATIFRSI
VVPKMLYGLELTNTSKSFTDNVNRQCRCALKQLLGLSKHCSNDINKLFNL
HSVAHDLKNRKMNLIQLLMRNPTTSTYLINLLTSSNEDRTFSIIQDIFDL
CLQENVDIFNLIINRKFQKLSPLSTLEAANQQLLQNYLNNWHIYDNRIKF
RQHLEANIPAK Run BLAST on NCBI transcript from alignment at sc0004497:1685..2769 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043710 ID=TCONS_00043710|Name=TCONS_00043710|organism=Clytia hemisphaerica|type=transcript|length=1085bp|location=Sequence derived from alignment at sc0004497:1685..2769 (Clytia hemisphaerica)
caaagaaagctaCCAGATGTTGTGCtaagatttttgataaaattatacAT
AAATGGTGAGGCAGCTACAAAATACAGAAACTTCATTACATCACCCTTTC
GTCTTGCCCAGGGTGTACGTCAAGGCTCAATATTATCCCCATACTTGTAT
AACTTTTACACAGAAGACATCATTGATAATATTCAGAGACTCAATATCGG
GACATATCTACCAGGTCAAATTAACACATCGATTATAGTATTCGCTGACG
ATATCATCCTCTTGAGTCCAAATTTGAAACACCTACAGCAAATGATTAAC
GAATGTACACTTTTTGGAATTGAAAACGGTCTCAAATTCAACCCTTCTAA
AACACAATTTCTGATATCCGGGCAATCACCTTTATGCAATCCATGTATTA
CCCTCAATGAAAAACAAATTGAACAGCAGTGTCAACTCAAACATCTGGGT
TTCAATTGGAAAATGGACAGAGACAAACTTTCGTTGAAAAATCACCAGGA
CTCTCGAATTGCAGAAATGTGGGCGACGACAGCATCGTTAACTTCATGTG
GTGTCAGGAAAATGCACCCAAGCACTGTAGCGACAATCTTTCGCTCAATT
GTTGTACCAAAGATGCTATATGGACTGGAACTGACAAATACATCAAAATC
ATTCACCGATAACGTAAACAGACAATGTCGTTGTGCCTTAAAACAACTGT
TAGGGCTATCAAAACACTGCAGCAATGATATTAATAAACTGTTCAATTTA
CACTCTGTTGCACATGACTTGAAGAACAGAAAAATGAACTTGATTCAACT
TTTAATGAGAAACCCAACTACCTCGACATATCTTATCAACCTTCTCACCA
GCTCAAACGAAGACCGCACATTCTCAATAATACAAGACATCTTTGACCTA
TGTCTCCAAGAGAACGTGGATATATTCAACCTCATTATAAATCGAAAATT
CCAAAAATTATCTCCCTTATCAACTCTGGAGGCTGCTAATCAACAACTCC
TTCAGAACTATCTAAACAACTGGCATATTTATGACAACAGAATCAAGTTC
AGACAACATCTAGAAGCAAACATACCTGCAAAAAC Coding sequence (CDS) from alignment at sc0004497:1685..2769 >TCONS_00043710 ID=TCONS_00043710|Name=TCONS_00043710|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0004497:1685..2769 (Clytia hemisphaerica)
caaagaaagctaCCAGATGTTGTGCtaagatttttgataaaattatacAT
AAATGGTGAGGCAGCTACAAAATACAGAAACTTCATTACATCACCCTTTC
GTCTTGCCCAGGGTGTACGTCAAGGCTCAATATTATCCCCATACTTGTAT
AACTTTTACACAGAAGACATCATTGATAATATTCAGAGACTCAATATCGG
GACATATCTACCAGGTCAAATTAACACATCGATTATAGTATTCGCTGACG
ATATCATCCTCTTGAGTCCAAATTTGAAACACCTACAGCAAATGATTAAC
GAATGTACACTTTTTGGAATTGAAAACGGTCTCAAATTCAACCCTTCTAA
AACACAATTTCTGATATCCGGGCAATCACCTTTATGCAATCCATGTATTA
CCCTCAATGAAAAACAAATTGAACAGCAGTGTCAACTCAAACATCTGGGT
TTCAATTGGAAAATGGACAGAGACAAACTTTCGTTGAAAAATCACCAGGA
CTCTCGAATTGCAGAAATGTGGGCGACGACAGCATCGTTAACTTCATGTG
GTGTCAGGAAAATGCACCCAAGCACTGTAGCGACAATCTTTCGCTCAATT
GTTGTACCAAAGATGCTATATGGACTGGAACTGACAAATACATCAAAATC
ATTCACCGATAACGTAAACAGACAATGTCGTTGTGCCTTAAAACAACTGT
TAGGGCTATCAAAACACTGCAGCAATGATATTAATAAACTGTTCAATTTA
CACTCTGTTGCACATGACTTGAAGAACAGAAAAATGAACTTGATTCAACT
TTTAATGAGAAACCCAACTACCTCGACATATCTTATCAACCTTCTCACCA
GCTCAAACGAAGACCGCACATTCTCAATAATACAAGACATCTTTGACCTA
TGTCTCCAAGAGAACGTGGATATATTCAACCTCATTATAAATCGAAAATT
CCAAAAATTATCTCCCTTATCAACTCTGGAGGCTGCTAATCAACAACTCC
TTCAGAACTATCTAAACAACTGGCATATTTATGACAACAGAATCAAGTTC
AGACAACATCTAGAAGCAAACATACCTGCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043710-exon-sc0004497-1491911889:1685..2769 | TCONS_00043710-exon-sc0004497-1491911889:1685..2769 | Clytia hemisphaerica | exon |
| TCONS_00043710-exon-sc0004497-1510915933:1685..2769 | TCONS_00043710-exon-sc0004497-1510915933:1685..2769 | Clytia hemisphaerica | exon |
| TCONS_00043710-exon-sc0004497-1575043694:1685..2769 | TCONS_00043710-exon-sc0004497-1575043694:1685..2769 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004497 | supercontig | sc0004497:1685..2769 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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