TCONS_00043740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043740
Unique NameTCONS_00043740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043740 ID=TCONS_00043740|Name=TCONS_00043740|organism=Clytia hemisphaerica|type=transcript|length=1088bp
TACCCAGTGGGCACAGAAAGTCCGGAGGACGACTATATGACGTCCATATC
ACGTCCGCCCGTCCAAAGCCCGTCCCCGTCCAATTGCGACGTCCTTAAGA
CGTCTTTAACGGACTTGTTTTTTACAGGACGTCTAAAAGGCGTCCTTAGA
ACGTCTAAAATTATGTTATTGAGACCAGCGATTGGAAGTCTGGTAACGAG
TGAATACAAACATGACTGTAGCCGGGGTGCAATATTTCATGACTTTGATT
TTGTAAATGCAAATAATGGAGCGTTCAGCAAGAATTTCACAAAtataaca
atttcattttcatatctttttaattcagacataaaaaaaaatttcatatt
atttttaCTAACTGTCAATTAATAAACAGTTAGTTCTAATAACCCCCCga
ctactttttgaaaataaaaatgaaatacagcaatctgattggcccgttat
aaaagttctccataattttttttgaggcGACAGAgtatttttcaaagcaa
aacttCGTGAGCAGGTGAAGAAAAGATGGTCATGGGCAAtcctttttcaa
tatttctggCAATTTGACATCTTCTTTTTATGGTTCAAAAGATTGCTAAA
AGTGGAGGATGCAAGTAAAAAGATTATAGAAGAgagcTTATGCTGAAAAG
ATGTAGCAAAGACTATAGATTGATCATTTTCAGGTTCGTACCCATCCTAC
TGGCCCTctggaaaatgcaaaaataactgATTGTTCAAAGCAAGATTCGA
TGAGCACTAATTGCGTAAATCTAACTCGTCAGTCCAGTTGAGCCAAAATA
TCATCAACATGTTACAGGTTGTGCATTAAGGAGAAAGGACTTTCAAACGT
GTGTGTTCGCAGATCGATTTCATCAATGTCTGACTGAGTCGACTTGAAGG
AAAAGAAGATaaccaaatttaaaattaaacacaaagaaaagcaTGTCAAA
CTTTAATGTTACCAAGTATTTGAAGACGTCCGATGTATTCACAAGTAATA
ACCAGAATAGAAGTTAAAGACTGTTATTAGACTTTTTTAAATCATATATA
TAAATTATCAAGGCGTAAAATTTGtatgtagttttttt
Run BLAST on NCBI

transcript from alignment at sc0004521:754..3816-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043740 ID=TCONS_00043740|Name=TCONS_00043740|organism=Clytia hemisphaerica|type=transcript|length=3063bp|location=Sequence derived from alignment at sc0004521:754..3816- (Clytia hemisphaerica)
TACCCAGTGGGCACAGAAAGTCCGGAGGACGACTATATGACGTCCATATC
ACGTCCGCCCGTCCAAAGCCCGTCCCCGTCCAATTGCGACGTCCTTAAGA
CGTCTTTAACGGACTTGTTTTTTACAGGACGTCTAAAAGGCGTCCTTAGA
ACGTCTAAAATTATGTTATTGAGACCAGCGATTGGAAGTCTGGTAACGAG
TGAATACAAACATGACTGTAGCCGGGGTGCAATATTTCATGACTTTGATT
TTGTAAATGCAAATAATGGAGCGTTCAGCAAGAATTTCACAAATATAACA
ATTTCATTTTCATATCTTTTTAATTCAGACATAAAAAAAAATTTCATATT
ATTTTTACTAACTGTCAATTAATAAACAGTTAGTTCTAATAACCCCCCGA
CTACTTTTTGAAAATAAAAATGAAATACAGCAATCTGATTGGCCCGTTAT
AAAAGTTCTCCATAATTTTTTTTGAGGCGACAGAGTATTTTTCAAAGCAA
AACTTCGTGAGCAGGTGAAGAAAAGATGGTCATGGGCAATCCTTTTTCAA
TATTTCTGGCAATTTGACATCTTCTTTTTATGGTTCAAAAGATTGCTAAA
AGTGGAGGATGCAAGTAAAAAGATTATAGAAGAGTAAGTGGCAAAAAATT
TCTTCTTTCTGTTTGTTTTCATACAGTAGTAGCGTAACACAGGCTCGCAA
ACCTACTAGCGTCCTAAAGAAAATTTGTTTCTTGTTGCATTTTGGTTTCT
GAACATCCTGGTTTTTTCTTCCACCGCTGATTTTGTCCACCGTTCATTTT
CCATTTCGAAGTTTTGAGTGTTCTCTTTCCACTTTTGGTTTAAGCTTTTC
ATTCTATTTTGCAAACAATAAGACACAAGAAATCAAGACTTCTTGAGATA
GGCAATAAAACAAGGCCTTATTTTCTCAAAACGTTTGTCTCTGTAGTTTG
TGTTTTTTAGGCATTTTTAATTTGGTTTAATTAGCTAGCGTTTGGCCTTT
TCAATTTTTAGAAAAATATTTTCTCTAAAGTGCATTTCGAATGTTTTGAT
TTAGAGACGTTCTTTTTTTTAAAACATTCGAATACGAAATTCGCTTTGAA
CATTCGAATCGCAAAATTTCGAATGTTTTGTTTTGATTCTTTTTATTGAA
ACTTTATTGTGAGCGAAGCATGATGTGGTGCTCTTCAGTTAATAAAATGT
TGGGATAAGATTATTATTTTTGCCACTTTCATTTTTAAGGAGCTTATGCT
GAAAAGATGTAGCAAAGACTATAGATTGATCATTTTCAGGTGAGTAAAAT
TTCTAAGATTATCTTTTCTCTAATAATTGGCTCGAAATTTCTGCAAATTA
ACTCGCATCATAATGAGTTTCTAAAGTTTAATTTTTTTGATAAGTTCTTT
GGGAAGCAAGTACAAAATTTCCTTTTTTCTGAAAGAACAGAGACACAAAA
GTGTTTTGTTCAAAAAGAGACCGGTGAATTGCAATAACTGTGACTTTTGA
TTAGTTGACAACAACCCATTTCTGTGGTGGAAGACAAAATCAGAGAAAGA
TTTTTGATCAAAAGACGTTATTATTTAATCAAAATAAGGGTCTTATTATC
GTGTGGTATTGTATGGGTTTTCTTTGAGAAACTTTAGTTTCATACGTATC
AGAATACCCTGATTGACTGTTACTTTACCTTTTAGGTTCGTACCCATCCT
ACTGGCCCTCTGGAAAATGCAAAAATAACTGATTGTTCAAAGCAAGGTAT
GCTATTGTTTGGTGTGTTTTAGATACCACAAGTCAACTTTACTATTGACG
AATAATACACCCCTCTTTCAGTGATCCGGTGAGAAATTCTTAACCACTTA
GGAATGAAATGAAGGAGCTAATCGAGATAACATCAGATTAAAGTTTTTGG
TTTCTTGACCCTCAATAGTCAACCCTGCTTTCTGTTTTTATTTTAGGACA
AGATTGAGATATTTTAGGCTCTTTATCCAATTTTACTCTTGAATTTCTTG
CAACTCAATTTCAGCTTAGCATTGTTCTTAAATTTTTGTAGCTTCATTAC
TATCTATTATAAAAAAGAGCTTGTATTTATAAAGTTTTTGAGGGGTTTTC
TACTCTTTCCCAAAATCAAAACTTTTCTTTCCTAATTTTGTTTTCCAGAT
TCGATGAGCACTAATTGCGTAAATCTAACTCGTCAGTCCAGTTGAGCCAA
AATATCATCAACATGTTACAGGTAAACCTCATAGATACTCATATGATAGA
AATGCTTAGATTCATCCATCGGATTGGGATCATAGTTTCTAAATACCCTC
TTTATTAAGTACCGAGATTTTGGGTAAAACCTTTCAAGGGAGGCACCTGT
ACCCTCAACTGCATATCAATAAAGGTGAAATGGAGCTTACATCATGATCT
CAAAAAGCTTGCTTTGTAGAATACATTTTTTCAGCAAGTGGGGATAAAAT
TAATGGACTAAAACTCGATGGGAATTAATATTCCCATATTTTTTATGGTT
GGGGATTTCAATTCTTTTGTTTTTAAGTCAGAAAATTCAGTGGGGATGAG
AAAAATAGCATAAAATTTTGCAGTGAGGATCGGTTTATTTCATTATCTTC
AATGGGGACAATAAGTCTCTACTTAAAACTGTGACAAATTAACACCCTTT
TTGTCCCATAGGTTAATAAGTTATTTTGGCACACTGCTATCCGGAGGGTT
ACAGTCAATAATTATCCCTAAAGAAAAGACATTCCTTTGATTTTGTCATA
CTATTTGTAATTATTTTCATAAATTATTATTTTCCTTTCAAGGTTGTGCA
TTAAGGAGAAAGGACTTTCAAACGTGTGTGTTCGCAGATCGATTTCATCA
ATGTCTGACTGAGTCGACTTGAAGGAAAAGAAGATAACCAAATTTAAAAT
TAAACACAAAGAAAAGCATGTCAAACTTTAATGTTACCAAGTATTTGAAG
ACGTCCGATGTATTCACAAGTAATAACCAGAATAGAAGTTAAAGACTGTT
ATTAGACTTTTTTAAATCATATATATAAATTATCAAGGCGTAAAATTTGT
ATGTAGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027422XLOC_027422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043740-exon-sc0004521-1575043694:3184..3816TCONS_00043740-exon-sc0004521-1575043694:3184..3816Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1575043694:2528..2577TCONS_00043740-exon-sc0004521-1575043694:2528..2577Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1575043694:2071..2131TCONS_00043740-exon-sc0004521-1575043694:2071..2131Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1575043694:1596..1668TCONS_00043740-exon-sc0004521-1575043694:1596..1668Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1575043694:754..1024TCONS_00043740-exon-sc0004521-1575043694:754..1024Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1510915933:3184..3816TCONS_00043740-exon-sc0004521-1510915933:3184..3816Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1510915933:2528..2577TCONS_00043740-exon-sc0004521-1510915933:2528..2577Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1510915933:2071..2131TCONS_00043740-exon-sc0004521-1510915933:2071..2131Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1510915933:1596..1668TCONS_00043740-exon-sc0004521-1510915933:1596..1668Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1510915933:754..1024TCONS_00043740-exon-sc0004521-1510915933:754..1024Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1491911889:3184..3816TCONS_00043740-exon-sc0004521-1491911889:3184..3816Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1491911889:2528..2577TCONS_00043740-exon-sc0004521-1491911889:2528..2577Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1491911889:2071..2131TCONS_00043740-exon-sc0004521-1491911889:2071..2131Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1491911889:1596..1668TCONS_00043740-exon-sc0004521-1491911889:1596..1668Clytia hemisphaericaexon
TCONS_00043740-exon-sc0004521-1491911889:754..1024TCONS_00043740-exon-sc0004521-1491911889:754..1024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004521supercontigsc0004521:754..3816 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.188146	0.212717	0.297287	0.0846939	0.0729379	0	0.272803	9.15397e-08	0	0.509935	0	0	0	0	0.274058	0.26051	0.301857	0.483345	0.118596	0.284739	0.417964	0.111966	0.146867	0.149521	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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