TCONS_00043741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043741
Unique NameTCONS_00043741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1510

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043741 ID=TCONS_00043741|Name=TCONS_00043741|organism=Clytia hemisphaerica|type=transcript|length=1510bp
GTCTGGTTGATCGTTGTCCTCTAGCATACCCAGTGGGCACAGAAAGTCCG
GAGGACGACTATATGACGTCCATATCACGTCCGCCCGTCCAAAGCCCGTC
CCCGTCCAATTGCGACGTCCTTAAGACGTCTTTAACGGACTTGTTTTTTA
CAGGACGTCTAAAAGGCGTCCTTAGAACGTCTAAAATTATGTTATTGAGA
CCAGCGATTGGAAGTCTGGTAACGAGTGAATACAAACATGACTGTAGCCG
GGGTGCAATATTTCATGACTTTGATTTTGTAAATGCAAATAATGGAGCGT
TCAGCAAGAATTTCACAAAtataacaatttcattttcatatctttttaat
tcagacataaaaaaaaatttcatattatttttaCTAACTGTCAATTAATA
AACAGTTAGTTCTAATAACCCCCCgactactttttgaaaataaaaatgaa
atacagcaatctgattggcccgttataaaagttctccataattttttttg
aggcGACAGAgtatttttcaaagcaaaacttCGTGAGCAGGTGAAGAAAA
GATGGTCATGGGCAAtcctttttcaatatttctggCAATTTGACATCTTC
TTTTTATGGTTCAAAAGATTGCTAAAAGTGGAGGATGCAAGTAAAAAGAT
TATAGAAGAgagcTTATGCTGAAAAGATGTAGCAAAGACTATAGATTGAT
CATTTTCAGGTGAGTAAAATTTCTAAGATTATCTTTTCTCTAATAATTGG
CTCGAAATTTCTGCAAATTAACTCGCATCATAATGAGTTtctaaagttta
atttttttgataagtTCTTTGGGAAGCAAGtacaaaatttccttttttct
gaaagaacaGAGACACAAAAGTGTTTTGTTCAAAAAGAGACCGGTGAATT
GCAATAACTGTGACTTTTGATTAGTTGACAACAACCCATTTCTGTGGTGG
AAGACAAAATCAGAGAAAGATTTTTGATCAAAAGACGTTATTATTTAATC
AAAATAAGGGTCTTATTATCGTGTGGTATTGTATGGGTTTTCTTTGAGAA
ACTTTAGTTTCATACGTATCAGAATACCCTGATTGACTGTTACTTTACCT
TTTAGGTTCGTACCCATCCTACTGGCCCTctggaaaatgcaaaaataact
gATTGTTCAAAGCAAGATTCGATGAGCACTAATTGCGTAAATCTAACTCG
TCAGTCCAGTTGAGCCAAAATATCATCAACATGTTACAGGTTGTGCATTA
AGGAGAAAGGACTTTCAAACGTGTGTGTTCGCAGATCGATTTCATCAATG
TCTGACTGAGTCGACTTGAAGGAAAAGAAGATaaccaaatttaaaattaa
acacaaagaaaagcaTGTCAAACTTTAATGTTACCAAGTATTTGAAGACG
TCCGATGTATTCACAAGTAATAACCAGAATAGAAGTTAAAGACTGTTATT
AGACTTTTTTAAATCATATATATAAATTATCAAGGCGTAAAATTTGtatg
tagttttttt
Run BLAST on NCBI

transcript from alignment at sc0004521:754..3842-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043741 ID=TCONS_00043741|Name=TCONS_00043741|organism=Clytia hemisphaerica|type=transcript|length=3089bp|location=Sequence derived from alignment at sc0004521:754..3842- (Clytia hemisphaerica)
GTCTGGTTGATCGTTGTCCTCTAGCATACCCAGTGGGCACAGAAAGTCCG
GAGGACGACTATATGACGTCCATATCACGTCCGCCCGTCCAAAGCCCGTC
CCCGTCCAATTGCGACGTCCTTAAGACGTCTTTAACGGACTTGTTTTTTA
CAGGACGTCTAAAAGGCGTCCTTAGAACGTCTAAAATTATGTTATTGAGA
CCAGCGATTGGAAGTCTGGTAACGAGTGAATACAAACATGACTGTAGCCG
GGGTGCAATATTTCATGACTTTGATTTTGTAAATGCAAATAATGGAGCGT
TCAGCAAGAATTTCACAAATATAACAATTTCATTTTCATATCTTTTTAAT
TCAGACATAAAAAAAAATTTCATATTATTTTTACTAACTGTCAATTAATA
AACAGTTAGTTCTAATAACCCCCCGACTACTTTTTGAAAATAAAAATGAA
ATACAGCAATCTGATTGGCCCGTTATAAAAGTTCTCCATAATTTTTTTTG
AGGCGACAGAGTATTTTTCAAAGCAAAACTTCGTGAGCAGGTGAAGAAAA
GATGGTCATGGGCAATCCTTTTTCAATATTTCTGGCAATTTGACATCTTC
TTTTTATGGTTCAAAAGATTGCTAAAAGTGGAGGATGCAAGTAAAAAGAT
TATAGAAGAGTAAGTGGCAAAAAATTTCTTCTTTCTGTTTGTTTTCATAC
AGTAGTAGCGTAACACAGGCTCGCAAACCTACTAGCGTCCTAAAGAAAAT
TTGTTTCTTGTTGCATTTTGGTTTCTGAACATCCTGGTTTTTTCTTCCAC
CGCTGATTTTGTCCACCGTTCATTTTCCATTTCGAAGTTTTGAGTGTTCT
CTTTCCACTTTTGGTTTAAGCTTTTCATTCTATTTTGCAAACAATAAGAC
ACAAGAAATCAAGACTTCTTGAGATAGGCAATAAAACAAGGCCTTATTTT
CTCAAAACGTTTGTCTCTGTAGTTTGTGTTTTTTAGGCATTTTTAATTTG
GTTTAATTAGCTAGCGTTTGGCCTTTTCAATTTTTAGAAAAATATTTTCT
CTAAAGTGCATTTCGAATGTTTTGATTTAGAGACGTTCTTTTTTTTAAAA
CATTCGAATACGAAATTCGCTTTGAACATTCGAATCGCAAAATTTCGAAT
GTTTTGTTTTGATTCTTTTTATTGAAACTTTATTGTGAGCGAAGCATGAT
GTGGTGCTCTTCAGTTAATAAAATGTTGGGATAAGATTATTATTTTTGCC
ACTTTCATTTTTAAGGAGCTTATGCTGAAAAGATGTAGCAAAGACTATAG
ATTGATCATTTTCAGGTGAGTAAAATTTCTAAGATTATCTTTTCTCTAAT
AATTGGCTCGAAATTTCTGCAAATTAACTCGCATCATAATGAGTTTCTAA
AGTTTAATTTTTTTGATAAGTTCTTTGGGAAGCAAGTACAAAATTTCCTT
TTTTCTGAAAGAACAGAGACACAAAAGTGTTTTGTTCAAAAAGAGACCGG
TGAATTGCAATAACTGTGACTTTTGATTAGTTGACAACAACCCATTTCTG
TGGTGGAAGACAAAATCAGAGAAAGATTTTTGATCAAAAGACGTTATTAT
TTAATCAAAATAAGGGTCTTATTATCGTGTGGTATTGTATGGGTTTTCTT
TGAGAAACTTTAGTTTCATACGTATCAGAATACCCTGATTGACTGTTACT
TTACCTTTTAGGTTCGTACCCATCCTACTGGCCCTCTGGAAAATGCAAAA
ATAACTGATTGTTCAAAGCAAGGTATGCTATTGTTTGGTGTGTTTTAGAT
ACCACAAGTCAACTTTACTATTGACGAATAATACACCCCTCTTTCAGTGA
TCCGGTGAGAAATTCTTAACCACTTAGGAATGAAATGAAGGAGCTAATCG
AGATAACATCAGATTAAAGTTTTTGGTTTCTTGACCCTCAATAGTCAACC
CTGCTTTCTGTTTTTATTTTAGGACAAGATTGAGATATTTTAGGCTCTTT
ATCCAATTTTACTCTTGAATTTCTTGCAACTCAATTTCAGCTTAGCATTG
TTCTTAAATTTTTGTAGCTTCATTACTATCTATTATAAAAAAGAGCTTGT
ATTTATAAAGTTTTTGAGGGGTTTTCTACTCTTTCCCAAAATCAAAACTT
TTCTTTCCTAATTTTGTTTTCCAGATTCGATGAGCACTAATTGCGTAAAT
CTAACTCGTCAGTCCAGTTGAGCCAAAATATCATCAACATGTTACAGGTA
AACCTCATAGATACTCATATGATAGAAATGCTTAGATTCATCCATCGGAT
TGGGATCATAGTTTCTAAATACCCTCTTTATTAAGTACCGAGATTTTGGG
TAAAACCTTTCAAGGGAGGCACCTGTACCCTCAACTGCATATCAATAAAG
GTGAAATGGAGCTTACATCATGATCTCAAAAAGCTTGCTTTGTAGAATAC
ATTTTTTCAGCAAGTGGGGATAAAATTAATGGACTAAAACTCGATGGGAA
TTAATATTCCCATATTTTTTATGGTTGGGGATTTCAATTCTTTTGTTTTT
AAGTCAGAAAATTCAGTGGGGATGAGAAAAATAGCATAAAATTTTGCAGT
GAGGATCGGTTTATTTCATTATCTTCAATGGGGACAATAAGTCTCTACTT
AAAACTGTGACAAATTAACACCCTTTTTGTCCCATAGGTTAATAAGTTAT
TTTGGCACACTGCTATCCGGAGGGTTACAGTCAATAATTATCCCTAAAGA
AAAGACATTCCTTTGATTTTGTCATACTATTTGTAATTATTTTCATAAAT
TATTATTTTCCTTTCAAGGTTGTGCATTAAGGAGAAAGGACTTTCAAACG
TGTGTGTTCGCAGATCGATTTCATCAATGTCTGACTGAGTCGACTTGAAG
GAAAAGAAGATAACCAAATTTAAAATTAAACACAAAGAAAAGCATGTCAA
ACTTTAATGTTACCAAGTATTTGAAGACGTCCGATGTATTCACAAGTAAT
AACCAGAATAGAAGTTAAAGACTGTTATTAGACTTTTTTAAATCATATAT
ATAAATTATCAAGGCGTAAAATTTGTATGTAGTTTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027422XLOC_027422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043741-exon-sc0004521-1575043694:3184..3842TCONS_00043741-exon-sc0004521-1575043694:3184..3842Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1575043694:2071..2577TCONS_00043741-exon-sc0004521-1575043694:2071..2577Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1575043694:1596..1668TCONS_00043741-exon-sc0004521-1575043694:1596..1668Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1575043694:754..1024TCONS_00043741-exon-sc0004521-1575043694:754..1024Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1510915933:3184..3842TCONS_00043741-exon-sc0004521-1510915933:3184..3842Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1510915933:2071..2577TCONS_00043741-exon-sc0004521-1510915933:2071..2577Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1510915933:1596..1668TCONS_00043741-exon-sc0004521-1510915933:1596..1668Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1510915933:754..1024TCONS_00043741-exon-sc0004521-1510915933:754..1024Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1491911889:3184..3842TCONS_00043741-exon-sc0004521-1491911889:3184..3842Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1491911889:2071..2577TCONS_00043741-exon-sc0004521-1491911889:2071..2577Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1491911889:1596..1668TCONS_00043741-exon-sc0004521-1491911889:1596..1668Clytia hemisphaericaexon
TCONS_00043741-exon-sc0004521-1491911889:754..1024TCONS_00043741-exon-sc0004521-1491911889:754..1024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004521supercontigsc0004521:754..3842 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0703475	0	0	0.259609	0	0	0.198151	0	0.0708446	0	0.0851747	0.0878742	0.105533	0	0.203603	0.384894	0.154159	0.0995945	0	0	0	0.127028	0.0963936	0	0.202881	0.197496	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top