TCONS_00043771 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043771
Unique NameTCONS_00043771
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043771 ID=TCONS_00043771|Name=TCONS_00043771|organism=Clytia hemisphaerica|type=transcript|length=657bp
ACTAACAAAGACCACCCTGGACGCCACAACCTCTGGAACATTCCacattt
ctggaatagcccaattctGCTGCAGACAAACATAACGCCAATAAATCCGG
GATAAAAAGGGCCGATGAAATTGATgaatttgaagagaattcttttGACT
tgtaaaaagtgagaaaatttacaataagccttcaaagaaaaaaagtttat
aagACATTGTATTGAGTATTTATTAAGCATTAAAGTTTGTTTAACTTTAT
ATTCTACCGCCACTCTTATTTAACCCCTATTTTCAACCCGCGGTCGTTAA
GATTCTCGAAATGCTTAGACGGTGCAAATCCTCTCTATGTGTCTGTCTTT
GACGAGGTCATCGGGCTATGTTGATGTTTGACGACTACCCCCAGTGTAGC
AGAAAATACGTACATGTTTTTCATAAgattatccaaaatttttgaagcct
tcggatgttgttaaccttttgagttttgaggctaaaaatattcttaattt
tatcattttgtgagtacttttgtgaaatttattaagaaattgggtgtttt
aNactcccccccccccctcagtgTAGCAGAAAATACGTACATGTTTTTCA
TAAgattatccaaaatttttgaagccttcggatgttgttaaccttttgag
ttttgag
Run BLAST on NCBI

transcript from alignment at sc0004559:5198..5854

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043771 ID=TCONS_00043771|Name=TCONS_00043771|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at sc0004559:5198..5854 (Clytia hemisphaerica)
ctcaaaactcaaaaggttaacaacatccgaaggcttcaaaaattttggat
aatcTTATGAAAAACATGTACGTATTTTCTGCTAcactgagggggggggg
ggagtNtaaaacacccaatttcttaataaatttcacaaaagtactcacaa
aatgataaaattaagaatatttttagcctcaaaactcaaaaggttaacaa
catccgaaggcttcaaaaattttggataatcTTATGAAAAACATGTACGT
ATTTTCTGCTACACTGGGGGTAGTCGTCAAACATCAACATAGCCCGATGA
CCTCGTCAAAGACAGACACATAGAGAGGATTTGCACCGTCTAAGCATTTC
GAGAATCTTAACGACCGCGGGTTGAAAATAGGGGTTAAATAAGAGTGGCG
GTAGAATATAAAGTTAAACAAACTTTAATGCTTAATAAATACTCAATACA
ATGTcttataaactttttttctttgaaggcttattgtaaattttctcact
ttttacaAGTCaaaagaattctcttcaaattcATCAATTTCATCGGCCCT
TTTTATCCCGGATTTATTGGCGTTATGTTTGTCTGCAGCagaattgggct
attccagaaatgtGGAATGTTCCAGAGGTTGTGGCGTCCAGGGTGGTCTT
TGTTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027447XLOC_027447Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043771-exon-sc0004559-1491911889:5198..5854TCONS_00043771-exon-sc0004559-1491911889:5198..5854Clytia hemisphaericaexon
TCONS_00043771-exon-sc0004559-1510915933:5198..5854TCONS_00043771-exon-sc0004559-1510915933:5198..5854Clytia hemisphaericaexon
TCONS_00043771-exon-sc0004559-1575043694:5198..5854TCONS_00043771-exon-sc0004559-1575043694:5198..5854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004559supercontigsc0004559:5198..5854 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0791914	0.0772241	0	0	1.8155	1.6878	0.305439	0.285948	0	0.0826597	0	0.052741	0	0	0	0	0.0594487	0.060933	0	0	0.153133	0	0.0907993	0.165099	0	0	0.868697	0.347661	0	0.0895524
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043771 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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