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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043794 ID=TCONS_00043794|Name=TCONS_00043794|organism=Clytia hemisphaerica|type=transcript|length=1174bp
CAGAAATTAGGTGAAGATTACGAGCAACATCAATAAGTTCAGGGTTTAGG
GCACCAGAGAGGGAAGGTTGGGACTTGAGATTAAAGGGAAGAGCCCCAAG
GACACATGGTGGGTCTAAAAcaagacaaaaataaaataaaaacaccaGAG
CAGAGCCAACAAGATTTGTGTAAACGATAAAAAGTGTGCACAGCTAGGCT
GCAATTTTGATTGAgaaagcaaaaaatcaaaataacaaaaaaaaaaaaaa
tcgaaagtgaaagtaaaaagaAACTTGCGTGGTTGTCATCTAAACTAAAA
AATGGGTAATCACAGCCAAGCACAGAGCAAGCGAACGGgaaggaaaaaaa
gaaggaGTGGCCCCGTAAGAtgaattatcaaaaataaacaaaattcaaga
aataatcTAAAAAGTATGAAAGTCATATCCAGGAAAAATTTTCTCCAGAG
TTGACAAATGTTCTATTTTAGTGTGAACATCAACGTTATTTTCATTGATT
GCAATGTAAACACTTCCATTATAAACCCAGAATCTGTCAATCAATCTTTC
ATCATATAATTTCTTACAGGAActccaaagaaattttgaatagGGAGCAA
GGTTACAGTTGATAAAAATTTTGCCTTCTAGATTAGCCTTTCTCAGTTTA
TCTGAAGCGGATTTACTaccaagtttttttttgttttggtgaAGTTTATC
GCACTTTTTCCTGTTCAAAAATCTTACAATCGTTCTGGCAGATTTatctt
ttttaccttttttaagtCTGTGGCAGGCTTCAATGTCATTTTCCTCCATT
TTAACACCAATACTTTCTGCAATAGCGATTACTTTGGACTCAAGGTTATC
GATTTCGATATCATCAGGGATTCCACAGATTTCAATGTTGTTCCTCCGGA
CGTATTGTTGAAGGTTGAGGTTTTCACTTTCCACTTTGATAAGTCGAgat
ttgatatctttgatgTTTGATTTCAAAGACTCATTATCAGCtaacaaaat
ttcattttcactcTTTAGTTGAGATATAATGTCGGATTTAGCATTACTGA
TTTCTTTAGAAAGGTCatctttgagtttttttattattctttactcataa
gtttttgttcctccatttccagaggccccttgaaaatgggtcctaccacc
ttttttaactcatttcaacctttt Run BLAST on NCBI protein sequence of TCONS_00043794-protein >TCONS_00043794-protein ID=TCONS_00043794-protein|Name=TCONS_00043794-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MEENDIEACHRLKKGKKDKSARTIVRFLNRKKCDKLHQNKKKLGSKSASD
KLRKANLEGKIFINCNLAPYSKFLWSSCKKLYDERLIDRFWVYNGSVYIA
INENNVDVHTKIEHLSTLEKIFPGYDFHTF Run BLAST on NCBI transcript from alignment at sc0004591:3305..4478 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043794 ID=TCONS_00043794|Name=TCONS_00043794|organism=Clytia hemisphaerica|type=transcript|length=1174bp|location=Sequence derived from alignment at sc0004591:3305..4478 (Clytia hemisphaerica)
aaaaggttgaaatgagttaaaaaaggtggtaggacccattttcaaggggc
ctctggaaatggaggaacaaaaacttatgagtaaagaataataaaaaaac
tcaaagatGACCTTTCTAAAGAAATCAGTAATGCTAAATCCGACATTATA
TCTCAACTAAAgagtgaaaatgaaattttgttaGCTGATAATGAGTCTTT
GAAATCAAAcatcaaagatatcaaatcTCGACTTATCAAAGTGGAAAGTG
AAAACCTCAACCTTCAACAATACGTCCGGAGGAACAACATTGAAATCTGT
GGAATCCCTGATGATATCGAAATCGATAACCTTGAGTCCAAAGTAATCGC
TATTGCAGAAAGTATTGGTGTTAAAATGGAGGAAAATGACATTGAAGCCT
GCCACAGacttaaaaaaggtaaaaaagatAAATCTGCCAGAACGATTGTA
AGATTTTTGAACAGGAAAAAGTGCGATAAACTtcaccaaaacaaaaaaaa
acttggtAGTAAATCCGCTTCAGATAAACTGAGAAAGGCTAATCTAGAAG
GCAAAATTTTTATCAACTGTAACCTTGCTCCctattcaaaatttctttgg
agTTCCTGTAAGAAATTATATGATGAAAGATTGATTGACAGATTCTGGGT
TTATAATGGAAGTGTTTACATTGCAATCAATGAAAATAACGTTGATGTTC
ACACTAAAATAGAACATTTGTCAACTCTGGAGAAAATTTTTCCTGGATAT
GACTTTCATACTTTTTAgattatttcttgaattttgtttatttttgataa
ttcaTCTTACGGGGCCACtccttctttttttccttcCCGTTCGCTTGCTC
TGTGCTTGGCTGTGATTACCCATTTTTTAGTTTAGATGACAACCACGCAA
GTTtctttttactttcactttcgattttttttttttttgttattttgatt
ttttgctttcTCAATCAAAATTGCAGCCTAGCTGTGCACACTTTTTATCG
TTTACACAAATCTTGTTGGCTCTGCTCtggtgtttttattttatttttgt
cttgTTTTAGACCCACCATGTGTCCTTGGGGCTCTTCCCTTTAATCTCAA
GTCCCAACCTTCCCTCTCTGGTGCCCTAAACCCTGAACTTATTGATGTTG
CTCGTAATCTTCACCTAATTTCTG Coding sequence (CDS) from alignment at sc0004591:3305..4478 >TCONS_00043794 ID=TCONS_00043794|Name=TCONS_00043794|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0004591:3305..4478 (Clytia hemisphaerica)
ATGGAGGAAAATGACATTGAAGCCTGCCACAGacttaaaaaaggtaaaaa
agatAAATCTGCCAGAACGATTGTAAGATTTTTGAACAGGAAAAAGTGCG
ATAAACTtcaccaaaacaaaaaaaaacttggtAGTAAATCCGCTTCAGAT
AAACTGAGAAAGGCTAATCTAGAAGGCAAAATTTTTATCAACTGTAACCT
TGCTCCctattcaaaatttctttggagTTCCTGTAAGAAATTATATGATG
AAAGATTGATTGACAGATTCTGGGTTTATAATGGAAGTGTTTACATTGCA
ATCAATGAAAATAACGTTGATGTTCACACTAAAATAGAACATTTGTCAAC
TCTGGAGAAAATTTTTCCTGGATATGACTTTCATACTTTTTAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043794-exon-sc0004591-1491911889:3305..4478 | TCONS_00043794-exon-sc0004591-1491911889:3305..4478 | Clytia hemisphaerica | exon |
| TCONS_00043794-exon-sc0004591-1510915933:3305..4478 | TCONS_00043794-exon-sc0004591-1510915933:3305..4478 | Clytia hemisphaerica | exon |
| TCONS_00043794-exon-sc0004591-1575043694:3305..4478 | TCONS_00043794-exon-sc0004591-1575043694:3305..4478 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004591 | supercontig | sc0004591:3305..4478 . |
Blast
The following BLAST results are available for this feature:
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